Metabacillus idriensis (DSM 19097, CCUG 58726, JCM 13437)

Name: Metabacillus idriensis (DSM 19097, CCUG 58726, JCM 13437)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1266

Type strain

Culture col. no. DSM 19097 CCUG 58726 JCM 13437 KCCM 90024 SMC 4352-2 2 more

NCBI tax ID(s) 324768

Special Collections DSMZ CCUG JCM CIP

History <- JCM <- K.S. Ko, SMC 4352-2 K. S. Ko SMC 4352-2. CIP <- 2007, JCM <- 2005, K.S. Ko, ARFID, Seoul, Korea: strain SMC 4352-2

Links

Metabacillus idriensis DSM 19097 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from new born child with sepsis.

Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297132

JCM 13437,DSM 19097,CIP 109494,LMG 24755

@ref 20215

Last LPSN update 2026-02-09 11:18:04

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Metabacillus

Species Metabacillus idriensis

Full scientific name Metabacillus idriensis (Ko et al. 2006) Gupta et al. 2020

Synonyms (1)

Bacillus idriensis

BacDive ID	Other strains from **Metabacillus idriensis** (1)	Type strain
1267	M. idriensis FR1-96, DSM 30731

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
120043	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7888	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
33304	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
120043	CIP Medium 45	Medium recipe at CIP
120043	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7888	positive	growth	30	mesophilic
33304	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120043	obligate aerobe
125439	obligate aerobe	90.7

Spore formation

@ref	Spore formation	Confidence
125438		95.273

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
120043	17632 ChEBI	nitrate	-	reduction
120043	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120043	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120043	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120043	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120043	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120043	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120043	not determinedn.d.	+/-	-	-	-	+/-	+/-	-	-	-	-	+	+	+	-	-	-	-	+/-	-	-	+/-	+	+/-	+/-	+	+/-	-	+	-	+	+	+	-	-	+	+/-	+/-	-	+	+	-	-	-	-	-	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Infection	#Patient	-
#Host	#Human	#Child

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7888	new born child with sepsis	Republic of Korea	KOR	Asia
67770	Blood of a newborn child with sepsis
120043	Human, Blood

Taxonmaps

69479

Global distribution of 16S sequence AY904033 (>99% sequence identity) for Bacillus idriensis from Microbeatlas

Aquatic Samples	269
Soil Samples	672
Animal Samples	703
Plant Samples	37
Total Samples	1681

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
7888	yes, in single cases	1	Risk group (German classification) According to TRBA 466
120043		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	G1763 assembly for Metabacillus idriensis DSM-19097	contig	GCA_904423875	324768.9	8112228193	324768	74.46
67770	ASM967476v1 assembly for Metabacillus idriensis DSM 19097	contig	GCA_009674765	324768.4	2997792678	324768	70.93

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7888	Bacillus idriensis strain SMC 4352-2 16S ribosomal RNA gene, partial sequence	AY904033	1437	324768
124043	Bacillus idriensis strain SMC 4352-2 16S ribosomal RNA gene, partial sequence.	MT277111	1415	324768
124043	Metabacillus idriensis strain SMC 4352-2 16S ribosomal RNA gene, partial sequence.	PQ248478	599	324768
124043	Metabacillus idriensis strain SMC 4352-2 16S ribosomal RNA gene, partial sequence.	PP757985	1416	324768

GC content

@ref	GC-content (mol%)	Method
7888	41.2
67770	41.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Metabacillus idriensis DSM 19097
NCBI: GCA_009674765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.80	no
125439	motility	BacteriaNetⓘ	yes	66.40	no
125439	gram_stain	BacteriaNetⓘ	variable	78.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus idriensis strain DSM 19097
PATRIC: 324768.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.47	no
125438	anaerobic	anaerobicⓘ	no	89.85	yes
125438	spore-forming	spore-formingⓘ	yes	95.27	no
125438	aerobic	aerobicⓘ	yes	73.45	no
125438	thermophilic	thermophileⓘ	no	95.30	yes
125438	flagellated	motile2+ⓘ	yes	87.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization of Tomato Seed Endophytic Bacteria as Growth Promoters and Potential Biocontrol Agents.	Roy M, Kang B, Yang S, Choi H, Choi K.	Plant Pathol J	10.5423/ppj.oa.09.2024.0142	2024
	A novel carotenoid from Metabacillus idriensis LipT27: production, extraction, partial characterization, biological activities and use in textile dyeing.	Gurkok S.	Arch Microbiol	10.1007/s00203-022-02922-w	2022
	Chironomus riparius Larval Gut Bacteriobiota and Its Potential in Microplastic Degradation.	Janakiev T, Milosevic D, Petrovic M, Miljkovic J, Stankovic N, Zdravkovic DS, Dimkic I.	Microb Ecol	10.1007/s00248-023-02199-6	2023
	Natural Carotenoids: Recent Advances on Separation from Microbial Biomass and Methods of Analysis.	Papapostolou H, Kachrimanidou V, Alexandri M, Plessas S, Papadaki A, Kopsahelis N.	Antioxidants (Basel)	10.3390/antiox12051030	2023
Phylogeny	Metabacillus arenae sp. nov., isolated from seashore sand.	Fang Q, Wu Q, Huang H, Hu Y, Li C, Mo K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005783	2023
Phylogeny	Genomic and Physiological Characterization of Metabacillus flavus sp. nov., a Novel Carotenoid-Producing Bacilli Isolated from Korean Marine Mud.	Hwang CY, Cho ES, Yoon DJ, Cha IT, Jung DH, Nam YD, Park SL, Lim SI, Seo MJ.	Microorganisms	10.3390/microorganisms10050979	2022
Phylogeny	Bacillus ectoiniformans sp. nov., a halotolerant bacterium isolated from deep-sea sediments.	Zhu D, Zhang P, Niu L, Xie C, Li P, Sun J, Hang F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000763	2015
Phylogeny	Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsis.	Ko KS, Oh WS, Lee MY, Lee JH, Lee H, Peck KR, Lee NY, Song JH	Int J Syst Evol Microbiol	10.1099/ijs.0.64213-0	2006
Phylogeny	Metabacillus kandeliae sp. nov., isolated from the rhizosphere soil of a decayed mangrove plant Kandelia candel.	Cai H, Huang Y, Liu Y, Yang L, Zhou Y, Yang S, Chen X, Jiang C, Jiang M, Jiang Y, Singh P	Int J Syst Evol Microbiol	10.1099/ijsem.0.005538	2022

References

#7888	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19097
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33304	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120043	Collection of Institut Pasteur ; Curators of the CIP; CIP 109494
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Metabacillus idriensis (DSM 19097, CCUG 58726, JCM 13437)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_904423875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media