Name: Promicromonospora xylanilytica DSM 21603
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12607

Type strain:

Species: Promicromonospora xylanilytica

Culture col. no.: DSM 21603, CCTCC AA 208046, JCM 19561, YIM 61515

Strain history: DSM 21603 <-- S.-K. Tang and W.-J. Li YIM 61515 <-- S. Qin.

NCBI tax ID(s): 566022 (species)

SI-ID 396839

DSM 21603

Section

Promicromonospora xylanilytica DSM 21603 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from healthy surface-sterilized leaves of a traditional Chinese medicinal plant, Maytenus austroyunnanensis.

Gram-positive
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Promicromonospora*
	Species	**Promicromonospora xylanilytica**
	Full Scientific Name (LPSN)	Promicromonospora xylanilytica Qin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30272]	Gram stain	positive

[Ref.: #30272]	Cell shape	ovoid-shaped

[Ref.: #30272]	Motility	no

[Ref.: #69291]	Colony color	Ivory (1014)
[Ref.: #69291]	Cultivation medium used	ISP 5

[Ref.: #69291]	Colony color	Light ivory (1015)
[Ref.: #69291]	Cultivation medium used	ISP 3

[Ref.: #69291]	Colony color	Light ivory (1015)
[Ref.: #69291]	Cultivation medium used	suter with tyrosine

[Ref.: #69291]	Colony color	Nut brown (8011), Fawn brown (8007), Sand yellow (1002)
[Ref.: #69291]	Cultivation medium used	ISP 4

[Ref.: #69291]	Colony color	Sand yellow (1002)
[Ref.: #69291]	Cultivation medium used	ISP 6

[Ref.: #69291]	Colony color	Sand yellow (1002), Clay brown (8003)
[Ref.: #69291]	Cultivation medium used	suter without tyrosine

[Ref.: #69291]	Colony color	Sand yellow (1002), Ivory (1014)
[Ref.: #69291]	Cultivation medium used	ISP 7

[Ref.: #69291]	Colony color	Sand yellow (1002), Light ivory (1015)
[Ref.: #69291]	Cultivation medium used	ISP 2

[Ref.: #30272]	Pigment production	yes
[Ref.: #69291]	Pigment production	no
[Ref.: #69291]	Pigment name	Melanin
[Ref.: #69291]	Pigment production	yes
[Ref.: #69291]	Pigmentation color	Sand yellow (1002), ochre brown (8001)
[Ref.: #69291]	Pigment name	soluble pigment

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 2

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 3

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 4

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 5

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 6

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	ISP 7

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69291]	Multicellular complex forming ability	no
[Ref.: #69291]	Multicellular complex name	Aerial mycelium
[Ref.: #69291]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69291]

Caption:

Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69291]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69291]

Caption:

Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69291]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69291]

Caption:

(ISP6, ISP7)

[Ref.: #69291]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69291]

Caption:

(ISP6, ISP7)

[Ref.: #69291]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15839]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15839]

Culture medium growth

[Ref.: #15839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15839]

Culture medium composition

expand / minimize

[Ref.: #15839]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15839]

Culture medium growth

[Ref.: #15839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15839]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15839]	growth	28 °C
[Ref.: #30272]	growth	10-37 °C
[Ref.: #30272]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15839]	Temperature range	mesophilic
[Ref.: #30272]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30272]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30272]

Oxygen tolerance

aerobe

[Ref.: #30272]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30272]		NaCl		growth	0-9	%
[Ref.: #69291]		NaCl		growth	0-7.5	%

[Ref.: #15839]	Murein short key	A11.59
[Ref.: #15839]	Murein types	A4alpha L-Lys-L-Ala-D-Glu

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69291]	arabinose ChEBI	+	growth
[Ref.: #69291]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30272]	fructose ChEBI	+	carbon source
[Ref.: #69291]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30272]	glucose ChEBI	+	carbon source
[Ref.: #69291]	glucose ChEBI	+	growth
[Ref.: #30272]	glycerol ChEBI	+	carbon source
[Ref.: #69291]	inositol ChEBI	-	growth
[Ref.: #30272]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30272]	maltose ChEBI	+	carbon source
[Ref.: #30272]	mannose ChEBI	+	carbon source
[Ref.: #69291]	mannose ChEBI	+/-	growth
[Ref.: #30272]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #30272]	raffinose ChEBI	+	carbon source
[Ref.: #69291]	raffinose ChEBI	-	growth
[Ref.: #69291]	rhamnose ChEBI	+	growth
[Ref.: #30272]	salicin ChEBI	+	carbon source
[Ref.: #30272]	sucrose ChEBI	+	carbon source
[Ref.: #69291]	sucrose ChEBI	+	growth
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69291]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30272]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #30272]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #30272]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69291]	3785	-	+	+	+	-	+	+	+	+	-	+	not determinedn.d.	+/-	-	-	-	+/-	-	+/-	+/-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69291]	5969	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+	-	-	+	+/-	+/-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15839]	Sample type/isolated from	healthy surface-sterilized leaves of a traditional Chinese medicinal plant, Maytenus austroyunnanensis
[Ref.: #15839]	Host species	Maytenus austroyunnanensis
[Ref.: #15839]	Geographic location (country and/or sea, region)	Xishuangbanna, Yunnan Province
[Ref.: #15839]	Country	China
[Ref.: #15839]	Country ISO 3 Code	CHN
[Ref.: #15839]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized leaves of Maytenus austroyunnanensis from the tropical rainforest in Xishuangbanna
[Ref.: #67770]	Host species	Maytenus austroyunnanensis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ214352 (>99% sequence identity) for Promicromonospora from Microbeatlas

Aquatic Samples	29
Soil Samples	788
Animal Samples	66
Plant Samples	501
Total Samples	1384

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15839]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15839]	Promicromonospora xylanilytica strain YIM 61515 16S ribosomal RNA gene, partial sequence	FJ214352	1437	ENA	566022 tax ID

[Ref.: #15839]	GC-content	70.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30272]	GC-content	70.4 mol%

Availability in culture collections External links

[Ref.: #15839]

Culture collection no.

DSM 21603, CCTCC AA 208046, JCM 19561, YIM 61515

[Ref.: #81821]

SI-ID 396839

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Antribacter gilvus gen. nov., sp. nov., a new member of the family Promicromonosporaceae from a karstic cavern.	Zhang LY, Fang BZ, Jiao JY, Zhang XT, Liu L, Meng XL, Ming H, Nie GX, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003682	2019	*
Phylogeny	Promicromonospora endophytica sp. nov., an endophytic actinobacterium isolated from the root of an Australian native Grey Box tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.033258-0	2011	*
Phylogeny	Promicromonospora xylanilytica sp. nov., an endophytic actinomycete isolated from surface-sterilized leaves of the medicinal plant Maytenus austroyunnanensis.	Qin S, Jiang JH, Klenk HP, Zhu WY, Zhao GZ, Zhao LX, Tang SK, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.032185-0	2011	*
	Xylanilyticolides A-C, Three New Compounds from Cultures of the Actinomycete Promicromonospora xylanilytica YIM 61515.	Wang ZX, Qin S, Xu LH, Chen HP, Sun H, Huang R, Li ZH, Feng T, Liu JK	Nat Prod Bioprospect	10.1007/s13659-018-0154-1	2018	*

References

#15839

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21603

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30272

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26613 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69291

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81821

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396839.1 )

#26613

IJSEM 84 2012 ( DOI 10.1099/ijs.0.032185-0 , PubMed 21335503 )

* These data were automatically processed and therefore are not curated

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