Name: Porphyromonas uenonis DSM 23387
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12511

Type strain:

Species: Porphyromonas uenonis

Culture col. no.: DSM 23387, ATCC BAA-906, CCUG 48615, JCM 13868, WAL 9902

Strain history: CCUG 48615 <-- S. M. Finegold WAL 9902.

NCBI tax ID(s): 1122976 (strain), 281920 (species)

SI-ID 133438

ATCC BAA-906, CCUG 48615, JCM 13868, DSM 23387

Other strains from Porphyromonas uenonis

P. uenonis CCUG 9993, ATCC 27908
P. uenonis CCUG 67383 B

Section

Porphyromonas uenonis DSM 23387 is an anaerobe, mesophilic bacterium that was isolated from human sacral decubitus ulcer.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Porphyromonadaceae*
	Genus	*Porphyromonas*
	Species	**Porphyromonas uenonis**
	Full Scientific Name (LPSN)	Porphyromonas uenonis Finegold et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #69480]	Motility	no Confidence in %90.086

[Ref.: #58261]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16823]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16823]

Culture medium growth

[Ref.: #16823]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16823]

Culture medium composition

expand / minimize

[Ref.: #16823]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #16823]

Culture medium growth

[Ref.: #16823]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16823]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16823]	growth	37 °C
[Ref.: #58261]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #16823]	Temperature range	mesophilic
[Ref.: #58261]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16823]	Oxygen tolerance	anaerobe
[Ref.: #58261]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.537

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #16823]	catalase	-	1.11.1.6
[Ref.: #16823]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16823]	13014	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #16823]	12429	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+/-	-	+	-	+/-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16823]	Sample type/isolated from	human sacral decubitus ulcer
[Ref.: #16823]	Geographic location (country and/or sea, region)	Los Angeles, CA
[Ref.: #16823]	Country	USA
[Ref.: #16823]	Country ISO 3 Code	USA
[Ref.: #16823]	Continent	North America

[Ref.: #58261]	Sample type/isolated from	Human sacral decubitus ulcer
[Ref.: #58261]	Sampling date	1991

[Ref.: #67770]	Sample type/isolated from	Human sacral decubitus ulcer
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB547668 (>99% sequence identity) for Porphyromonas uenonis from Microbeatlas

Aquatic Samples	50
Soil Samples	65
Animal Samples	6767
Plant Samples	3
Total Samples	6885

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16823]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16823]	Porphyromonas uenonis 16S ribosomal RNA gene, partial sequence	AY570514	1457	ENA	281920 tax ID
[Ref.: #20218]	Porphyromonas uenonis gene for 16S ribosomal RNA, partial sequence, strain: JCM 13868	AB547668	1490	ENA	281920 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Porphyromonas uenonis DSM 23387 = JCM 13868	GCA_000482365	scaffold	GenBank	1122976 tax ID
[Ref.: #67770]	Porphyromonas uenonis DSM 23387 = JCM 13868	GCA_000613705	contig	GenBank	1122976 tax ID
[Ref.: #66792]	Porphyromonas uenonis DSM 23387	1122976.3	wgs	PATRIC	1122976 tax ID	*
[Ref.: #66792]	Porphyromonas uenonis JCM 13868	1236493.3	wgs	PATRIC	1122976 tax ID	*
[Ref.: #66792]	Porphyromonas uenonis JCM 13868	2585427891	draft	JGI IMG/M	1122976 tax ID	*
[Ref.: #66792]	Porphyromonas uenonis DSM 23387	2528311143	draft	JGI IMG/M	1122976 tax ID	*

[Ref.: #16823]	GC-content	52.5 mol%
[Ref.: #67770]	GC-content	52.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Porphyromonas uenonis DSM 23387 = JCM 13868 DSM 23387 NCBI: GCA_000482365.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Porphyromonas uenonis DSM 23387 PATRIC: 1122976.3
[Ref.: #69480]	motile	no	90.386	no
[Ref.: #69480]	flagellated	no	97.514	no
[Ref.: #69480]	gram-positive	no	97.333	no
[Ref.: #69480]	anaerobic	yes	99.3	yes
[Ref.: #69480]	aerobic	no	97.447	yes
[Ref.: #69480]	halophile	no	81.625	no
[Ref.: #69480]	spore-forming	no	96.707	no
[Ref.: #69480]	thermophile	no	95.755	no
[Ref.: #69480]	glucose-util	yes	79.884	no
[Ref.: #69480]	glucose-ferment	yes	51.654	no

Availability in culture collections External links

[Ref.: #16823]

Culture collection no.

DSM 23387, ATCC BAA-906, CCUG 48615, JCM 13868, WAL 9902

[Ref.: #81730]

SI-ID 133438

References

#16823

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23387

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#58261 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48615

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81730

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID133438.1 )

* These data were automatically processed and therefore are not curated

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Porphyromonas uenonis DSM 23387 = JCM 13868 DSM 23387

Porphyromonas uenonis DSM 23387

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