Name: Planococcus maritimus TF-9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11964

Type strain:

Species: Planococcus maritimus

Strain Designation: TF-9

Culture col. no.: DSM 17275, CIP 11543, JCM 11543, KCCM 41587, CIP 108219

Strain history: CIP <- 2003, JCM <- 2002, KRIBB: strain TF-9

NCBI tax ID(s): 192421 (species)

SI-ID 128004

KCTC 3816, JCM 11543, CIP 108219, DSM 17275, CIP 11543

Special Collections

Section

Planococcus maritimus TF-9 is a Gram-positive bacterium that was isolated from seawater.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Planococcus*
	Species	**Planococcus maritimus**
	Full Scientific Name (LPSN)	Planococcus maritimus Yoon et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #120838]	Gram stain	positive

[Ref.: #120838]	Cell shape	coccus-shaped

[Ref.: #120838]	Motility	no

[Ref.: #120838]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6867]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6867]

Culture medium growth

[Ref.: #6867]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6867]

Culture medium composition

expand / minimize

[Ref.: #33213]

Culture medium

Marine agar (MA)

[Ref.: #33213]

Culture medium growth

[Ref.: #33213]

Culture medium composition

expand / minimize

[Ref.: #120838]

Culture medium

CIP Medium 13

[Ref.: #120838]

Culture medium growth

[Ref.: #120838]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120838]

Culture medium

CIP Medium 72

[Ref.: #120838]

Culture medium growth

[Ref.: #120838]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6867]		growth	28 °C
[Ref.: #33213]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120838]		growth	10-30 °C
[Ref.: #120838]	no	growth	37 °C
[Ref.: #120838]	no	growth	41 °C
[Ref.: #120838]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #120838]	NaCl		growth	4-10	%
[Ref.: #120838]	NaCl	no	growth	0	%
[Ref.: #120838]	NaCl	no	growth	2	%

[Ref.: #67770]

Observation

quinones: MK-8, MK-7, MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120838]	hippurate ChEBI	+	hydrolysis
[Ref.: #120838]	nitrate ChEBI	+	reduction
[Ref.: #120838]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120838]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120838]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120838]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120838]	amylase	-
[Ref.: #120838]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120838]	caseinase	+	3.4.21.50
[Ref.: #120838]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120838]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120838]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120838]	gelatinase	+/-
[Ref.: #120838]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #120838]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120838]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120838]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120838]	oxidase	-
[Ref.: #120838]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120838]	tryptophan deaminase	-
[Ref.: #120838]	tween esterase	-
[Ref.: #120838]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120838]	10995	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6867]	Sample type/isolated from	seawater
[Ref.: #6867]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #6867]	Country	Republic of Korea
[Ref.: #6867]	Country ISO 3 Code	KOR
[Ref.: #6867]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater of a tidal flat of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #120838]	Sample type/isolated from	Environment, Sea water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF500007 (>99% sequence identity) for Planococcus from Microbeatlas

Aquatic Samples	2240
Soil Samples	6586
Animal Samples	2949
Plant Samples	1109
Total Samples	12884

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6867]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120838]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6867]	Planococcus maritimus strain TF-9 16S ribosomal RNA gene, partial sequence	AF500007	1507	GenBank ENA	192421 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planococcus maritimus DSM 17275	GCA_001687625	complete	GenBank ENA	192421 tax ID	*
[Ref.: #66792]	Planococcus maritimus strain DSM 17275	192421.5	complete	PATRIC	192421 tax ID	*
[Ref.: #66792]	Planococcus maritimus DSM 17275	2811995333	complete	JGI IMG/M	192421 tax ID	*

[Ref.: #6867]	GC-content	48 mol%
[Ref.: #67770]	GC-content	48 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planococcus maritimus DSM 17275 NCBI: GCA_001687625.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	73	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planococcus maritimus DSM 17275 NCBI: GCA_001687625.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.653	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.9	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.921	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	56.611	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.401	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	58.394	no

Availability in culture collections External links

[Ref.: #6867]

Culture collection no.

DSM 17275, CIP 11543, JCM 11543, KCCM 41587, CIP 108219

[Ref.: #81176]

SI-ID 128004

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site.	Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003541	2019	*
Phylogeny	Planococcus versutus sp. nov., isolated from soil.	See-Too WS, Ee R, Madhaiyan M, Kwon SW, Tan JY, Lim YL, Convey P, Pearce DA, Yin WF, Chan KG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001721	2017	*
Phylogeny	Planococcus dechangensis sp. nov., a moderately halophilic bacterium isolated from saline and alkaline soils in Dechang Township, Zhaodong City, China.	Wang K, Zhang L, Li J, Pan Y, Meng L, Xu T, Zhang C, Liu H, Hong S, Huang H, Jiang J	Antonie Van Leeuwenhoek	10.1007/s10482-015-0399-1	2015	*
Phylogeny	Planococcus maritimus sp. nov., isolated from sea water of a tidal flat in Korea.	Yoon JH, Weiss N, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02557-0	2003	*

References

#6867

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17275

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33213 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81176

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID128004.1 )

#120838 Collection of Institut Pasteur ; Curators of the CIP; CIP 108219
* These data were automatically processed and therefore are not curated

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Planococcus maritimus DSM 17275

Planococcus maritimus DSM 17275

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