Name: Hydrogenovibrio crunogenus XCL-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11929

Type strain:

Species: Hydrogenovibrio crunogenus

Strain Designation: XCL-2

Culture col. no.: DSM 25203

Strain history: <- K.M. Scott, University of South Florida, Tampa, USA; XCL-2 <- D. Nelson, University of California, Davis

NCBI tax ID(s): 39765 (species)

SI-ID 405057

DSM 25203

Special Collections

DSMZ

Other strains from Hydrogenovibrio crunogenus

Section

Hydrogenovibrio crunogenus XCL-2 is a bacterium that was isolated from hydrothermal vents.

Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Hydrogenovibrio*
	Species	**Hydrogenovibrio crunogenus**
	Full Scientific Name (LPSN)	Hydrogenovibrio crunogenus (Jannasch et al. 1985) Boden et al. 2017

Synonym

Thiomicrospira crunogena

Information on morphological and physiological properties Morphology

[Ref.: #17939]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17939]

Culture medium

THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)

[Ref.: #17939]

Culture medium growth

[Ref.: #17939]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17939]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17939]			growth	20 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17939]	Sample type/isolated from	hydrothermal vents
[Ref.: #17939]	Geographic location (country and/or sea, region)	Pacific Ocean, Galapagos Rift
[Ref.: #17939]	Country	Ecuador
[Ref.: #17939]	Country ISO 3 Code	ECU
[Ref.: #17939]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17939]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hydrogenovibrio crunogenus XCL-2	637000325	complete	JGI IMG/M	317025 tax ID	*

[Ref.: #17939]

GC-content

43 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #17939]

Culture collection no.

DSM 25203

[Ref.: #81143]

SI-ID 405057

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Horizontal acquisition of hydrogen conversion ability and other habitat adaptations in the Hydrogenovibrio strains SP-41 and XCL-2.	Gonnella G, Adam N, Perner M	BMC Genomics	10.1186/s12864-019-5710-5	2019	*
Metabolism	Sulfonamide inhibition studies of the alpha-carbonic anhydrase from the gammaproteobacterium Thiomicrospira crunogena XCL-2, TcruCA.	Vullo D, Bhatt A, Mahon BP, McKenna R, Supuran CT	Bioorg Med Chem Lett	10.1016/j.bmcl.2015.11.104	2015	*
Metabolism	Dissolved inorganic carbon uptake in Thiomicrospira crunogena XCL-2 is Deltap- and ATP-sensitive and enhances RubisCO-mediated carbon fixation.	Menning KJ, Menon BB, Fox G, Scott KM	Arch Microbiol	10.1007/s00203-015-1172-6	2015	*
Enzymology	Structural and biophysical characterization of the alpha-carbonic anhydrase from the gammaproteobacterium Thiomicrospira crunogena XCL-2: insights into engineering thermostable enzymes for CO2 sequestration.	Diaz-Torres NA, Mahon BP, Boone CD, Pinard MA, Tu C, Ng R, Agbandje-McKenna M, Silverman D, Scott K, McKenna R	Acta Crystallogr D Biol Crystallogr	10.1107/S1399004715012183	2015	*
Metabolism	Activity and anion inhibition studies of the alpha-carbonic anhydrase from Thiomicrospira crunogena XCL-2 Gammaproteobacterium.	Mahon BP, Diaz-Torres NA, Pinard MA, Tu C, Silverman DN, Scott KM, McKenna R	Bioorg Med Chem Lett	10.1016/j.bmcl.2015.05.001	2015	*
Enzymology	Preliminary X-ray crystallographic analysis of alpha-carbonic anhydrase from Thiomicrospira crunogena XCL-2.	Diaz Torres N, Gonzalez G, Biswas S, Scott KM, McKenna R	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309112031053	2012	*
Phylogeny	Metagenomic comparison of two Thiomicrospira lineages inhabiting contrasting deep-sea hydrothermal environments.	Brazelton WJ, Baross JA	PLoS One	10.1371/journal.pone.0013530	2010	*
Genetics	The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.	Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hugler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH Jr, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT	PLoS Biol	10.1371/journal.pbio.0040383	2006	*

References

#17939

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25203

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81143

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405057.1 )

* These data were automatically processed and therefore are not curated

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