Name: Thiomicrorhabdus frisia JB-A2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11924

Type strain:

Species: Thiomicrorhabdus frisia

Strain Designation: JB-A2

Culture col. no.: DSM 12351, ATCC 700878

Strain history: <- J. Küver, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; JB-A2 <- T. Brinkhoff {1997}

NCBI tax ID(s): 63655 (species)

SI-ID 44191

ATCC 700878, DSM 12351

Special Collections

Other strains from Thiomicrorhabdus frisia

Section

Thiomicrorhabdus frisia JB-A2 is a chemolithoautotroph, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
chemolithoautotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrorhabdus*
	Species	**Thiomicrorhabdus frisia**
	Full Scientific Name (LPSN)	Thiomicrorhabdus frisia (Brinkhoff et al. 1999) Boden et al. 2017

Synonym

Thiomicrospira frisia

Information on morphological and physiological properties Morphology

[Ref.: #43182]	Gram stain	negative

[Ref.: #43182]	Cell length	1.0-2.7 µm

[Ref.: #43182]	Cell width	0.3-0.5 µm

[Ref.: #43182]	Cell shape	rod-shaped

[Ref.: #43182]	Motility	yes

[Ref.: #43182]	Flagellum arrangement	monotrichous

[Ref.: #43182]	Colony color	White
[Ref.: #43182]	Cultivation medium used	Triosulfate agar

[Ref.: #43182]	Colony color	yellow
[Ref.: #43182]	Cultivation medium used	Triosulfate agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4710]

Culture medium

THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)

[Ref.: #4710]

Culture medium growth

[Ref.: #4710]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4710]

Culture medium composition

expand / minimize

[Ref.: #43182]

Culture medium

Triosulfate agar

[Ref.: #43182]

Culture medium growth

		Temperature
[Ref.: #4710]	growth	30 °C
[Ref.: #43182]	maximum	39 °C
[Ref.: #43182]	minimum	3.5 °C
[Ref.: #43182]	optimum	32-35 °C

		pH
[Ref.: #43182]	maximum	8.5
[Ref.: #43182]	minimum	4.2
[Ref.: #43182]	optimum	6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43182]

Nutrition type

chemolithoautotroph

[Ref.: #43182]	Type of spore	endospore
[Ref.: #43182]	Ability of spore formation	no
[Ref.: #43182]	Type of spore	exospore (microbial cyst)
[Ref.: #43182]	Ability of spore formation	no

	Salt		Salt conc.
[Ref.: #43182]	NaCl	optimum	0.47	M
[Ref.: #43182]	NaCl	minimum	0.1	M
[Ref.: #43182]	NaCl	maximum	1.24	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43182]	ammonium ChEBI	+	nitrogen source
[Ref.: #43182]	dihydrogen ChEBI	-	electron donor
[Ref.: #43182]	dioxygen ChEBI	+	electron acceptor
[Ref.: #43182]	iron ChEBI	-	electron donor
[Ref.: #43182]	manganese ChEBI	-	electron donor
[Ref.: #43182]	nitrate ChEBI	-	reduction
[Ref.: #43182]	sulfide ChEBI	+	electron donor
[Ref.: #43182]	sulfite ChEBI	-	electron donor
[Ref.: #43182]	tetrathionate ChEBI	+	electron donor
[Ref.: #43182]	thiocyanate ChEBI	-	electron donor
[Ref.: #43182]	thiosulfate ChEBI	+	electron donor
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43182]		cobalamin ChEBI	yes
[Ref.: #43182]		elemental sulfur ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43182]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43182]	hydrogenase	-	1.12.99.6
[Ref.: #43182]	nitrogenase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4710]	Sample type/isolated from	marine sediment
[Ref.: #4710]	Geographic location (country and/or sea, region)	Jadebusen
[Ref.: #4710]	Country	Germany
[Ref.: #4710]	Country ISO 3 Code	DEU
[Ref.: #4710]	Continent	Europe

[Ref.: #43182]	Geographic location (country and/or sea, region)	Frisia, coastal region of north-western Germany and north-eastern Netherlands
[Ref.: #43182]	Country	Germany
[Ref.: #43182]	Country ISO 3 Code	DEU
[Ref.: #43182]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF013974 (>99% sequence identity) for Thiomicrorhabdus frisia from Microbeatlas

Aquatic Samples	534
Soil Samples	44
Animal Samples	10
Plant Samples	6
Total Samples	594

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4710]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4710]	Thiomicrospira sp. JB-A2 16S ribosomal RNA gene, partial sequence	AF013974	1464	GenBank ENA	63655 tax ID

[Ref.: #4710]	GC-content	39.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #43182]	GC-content	39.6 mol%

Availability in culture collections External links

[Ref.: #4710]

Culture collection no.

DSM 12351, ATCC 700878

[Ref.: #81138]

SI-ID 44191

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Thiomicrospira hydrogeniphila (Watsuji et al. 2016) to Thiomicrorhabdus hydrogeniphila comb. nov., with emended description of Thiomicrorhabdus (Boden et al., 2017).	Boden R, Scott KM, Rae AW, Hutt LP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002279	2017	*
Phylogeny	Thiomicrospira hydrogeniphila sp. nov., an aerobic, hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a seawater tank containing a block of beef tallow.	Watsuji TO, Hada E, Miyazaki M, Ichimura M, Takai K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001250	2016	*
Phylogeny	Thiomicrospira kuenenii sp. nov. and Thiomicrospira frisia sp. nov., two mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacteria isolated from an intertidal mud flat.	Brinkhoff T, Muyzer G, Wirsen CO, Kuever J	Int J Syst Bacteriol	10.1099/00207713-49-2-385	1999	*

References

#4710

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12351

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43182

Rich Boden, Kathleen M. Scott, John Williams, Sydney Russel, Kirsten Antonen, Alex W. Rae and Lee P. Hutt: An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira. IJSEM 67: 1140 - 1151 2017 ( DOI 10.1099/ijsem.0.001855 , PubMed 28581925 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81138

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44191.1 )

* These data were automatically processed and therefore are not curated

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