Name: Phyllobacterium trifolii PETP02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11876

Type strain:

Species: Phyllobacterium trifolii

Strain Designation: PETP02

Culture col. no.: DSM 17315, CECT 7015, LMG 22712

Strain history: <- E. Velázquez <- F. Fernández-Santos; PETP02 {1988}

NCBI tax ID(s): 300193 (species)

SI-ID 134817

LMG22712, CECT 7015, DSM 17315, CFBP 7002, ICMP 19892

Section

Phyllobacterium trifolii PETP02 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from nodules from Trifolium pratense.

Gram-negative
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Phyllobacterium*
	Species	**Phyllobacterium trifolii**
	Full Scientific Name (LPSN)	Phyllobacterium trifolii Valverde et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6893]

Culture medium

YMA-MEDIUM (DSMZ Medium 1031)

[Ref.: #6893]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #6893]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6893]			growth	28 °C

[Ref.: #6893]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6893]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6893]	Sample type/isolated from	nodules from Trifolium pratense
[Ref.: #6893]	Host species	Trifolium pratense
[Ref.: #6893]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #6893]	Country	Spain
[Ref.: #6893]	Country ISO 3 Code	ESP
[Ref.: #6893]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6893]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phyllobacterium trifolii CECT 7015	GCA_014192095	scaffold	GenBank	300193 tax ID	*
[Ref.: #66792]	Phyllobacterium trifolii strain CECT 7015	300193.4	wgs	PATRIC	300193 tax ID	*
[Ref.: #66792]	Phyllobacterium trifolii CECT 7015	2824382165	draft	JGI IMG/M	300193 tax ID	*

[Ref.: #6893]

GC-content

56.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phyllobacterium trifolii CECT 7015 NCBI: GCA_014192095.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phyllobacterium trifolii CECT 7015 NCBI: GCA_014192095.1
[Ref.: #69480]	flagellated	no	84.458	no
[Ref.: #69480]	gram-positive	no	97.667	no
[Ref.: #69480]	anaerobic	no	99.15	yes
[Ref.: #69480]	aerobic	yes	94.685	no
[Ref.: #69480]	halophile	no	89.59	no
[Ref.: #69480]	spore-forming	no	95.78	no
[Ref.: #69480]	glucose-util	yes	87.555	no
[Ref.: #69480]	thermophile	no	98.97	no
[Ref.: #69480]	motile	yes	81.315	no
[Ref.: #69480]	glucose-ferment	no	88.343	no

Availability in culture collections External links

[Ref.: #6893]

Culture collection no.

DSM 17315, CECT 7015, LMG 22712

[Ref.: #81093]

SI-ID 134817

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Studies on lipid A isolated from Phyllobacterium trifolii PETP02(T) lipopolysaccharide.	Zamlynska K, Komaniecka I, Zebracki K, Mazur A, Sroka-Bartnicka A, Choma A	Antonie Van Leeuwenhoek	10.1007/s10482-017-0872-0	2017	*
Phylogeny	Phyllobacterium loti sp. nov. isolated from nodules of Lotus corniculatus.	Sanchez M, Ramirez-Bahena MH, Peix A, Lorite MJ, Sanjuan J, Velazquez E, Monza J	Int J Syst Evol Microbiol	10.1099/ijs.0.052993-0	2013	*
Phylogeny	Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in Spanish soils.	Valverde A, Velazquez E, Fernandez-Santos F, Vizcaino N, Rivas R, Mateos PF, Martinez-Molina E, Igual JM, Willems A	Int J Syst Evol Microbiol	10.1099/ijs.0.63551-0	2005	*
	The O-specific polysaccharides from Phyllobacterium trifolii PETP02(T) LPS contain 3-C-methyl-D-rhamnose.	Zamlynska K, Komaniecka I, Turska-Szewczuk A, Pac M, Choma A	Carbohydr Res	10.1016/j.carres.2015.02.013	2015	*

References

#6893

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17315

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81093

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134817.1 )

* These data were automatically processed and therefore are not curated

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Phyllobacterium trifolii CECT 7015

Phyllobacterium trifolii CECT 7015

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