Name: Nitratireductor kimnyeongensis DSM 19185
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11872

Type strain:

Species: Nitratireductor kimnyeongensis

Culture col. no.: DSM 19185, JCM 14851, KACC 11904, Ky 101, NBRC 106418

Strain history: S. D. Lee KY101.

NCBI tax ID(s): 1231184 (strain), 430679 (species)

SI-ID 402247

DSM 19185

Section

Nitratireductor kimnyeongensis DSM 19185 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from dried seaweed.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Nitratireductor*
	Species	**Nitratireductor kimnyeongensis**
	Full Scientific Name (LPSN)	Nitratireductor kimnyeongensis Kang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32588]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.982

[Ref.: #32588]	Cell length	1.95 µm

[Ref.: #32588]	Cell width	0.45 µm

[Ref.: #32588]	Cell shape	rod-shaped

[Ref.: #32588]	Motility	yes

[Ref.: #32588]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7957]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #7957]

Culture medium growth

[Ref.: #7957]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7957]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7957]	growth	28 °C
[Ref.: #32588]	growth	10-40 °C
[Ref.: #32588]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #7957]	Temperature range	mesophilic
[Ref.: #32588]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32588]			optimum	9.1
[Ref.: #32588]			growth	6.1-12.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32588]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32588]		NaCl		growth	<7	%

[Ref.: #32588]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32588]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32588]	esculin ChEBI	+	hydrolysis
[Ref.: #32588]	fructose ChEBI	+	carbon source
[Ref.: #32588]	fucose ChEBI	+	carbon source
[Ref.: #32588]	glucose ChEBI	+	carbon source
[Ref.: #32588]	L-arabitol ChEBI	+	carbon source
[Ref.: #32588]	mannitol ChEBI	+	carbon source
[Ref.: #32588]	ribose ChEBI	+	carbon source
[Ref.: #32588]	sucrose ChEBI	+	carbon source
[Ref.: #32588]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32588]	acid phosphatase	+	3.1.3.2
[Ref.: #32588]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32588]	catalase	+	1.11.1.6
[Ref.: #32588]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7957]	Sample type/isolated from	dried seaweed
[Ref.: #7957]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #7957]	Country	Republic of Korea
[Ref.: #7957]	Country ISO 3 Code	KOR
[Ref.: #7957]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Dried seaweed sample collected from Kimnyeong Beach in Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Algae	-
#Engineered	#Food production	-
#Condition	#Xerophilic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM498744 (>99% sequence identity) for Nitratireductor from Microbeatlas

Aquatic Samples	1046
Soil Samples	144
Animal Samples	279
Plant Samples	53
Total Samples	1522

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7957]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7957]	Nitratireductor kimnyeongensis partial 16S rRNA gene, type strain KY 101T	AM498744	1371	ENA	1231184 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nitratireductor kimnyeongensis KACC 11904	GCA_019891395	complete	GenBank	430679 tax ID	*
[Ref.: #66792]	Nitratireductor kimnyeongensis strain KACC 11904	430679.3	complete	PATRIC	430679 tax ID	*
[Ref.: #66792]	Nitratireductor kimnyeongensis strain KACC 11904	430679.6	complete	PATRIC	430679 tax ID	*
[Ref.: #66792]	Nitratireductor kimnyeongensis strain KACC 11904	430679.5	complete	PATRIC	430679 tax ID	*
[Ref.: #66792]	Nitratireductor kimnyeongensis strain KACC 11904	430679.4	complete	PATRIC	430679 tax ID	*

[Ref.: #7957]

GC-content

60.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nitratireductor kimnyeongensis KACC 11904 NCBI: GCA_019891395.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitratireductor kimnyeongensis KACC 11904 NCBI: GCA_019891395.1
[Ref.: #69480]	flagellated	no	66.087	no
[Ref.: #69480]	gram-positive	no	98.412	yes
[Ref.: #69480]	anaerobic	no	97.987	yes
[Ref.: #69480]	aerobic	yes	92.576	yes
[Ref.: #69480]	halophile	yes	63.128	yes
[Ref.: #69480]	spore-forming	no	97.314	no
[Ref.: #69480]	motile	yes	88.554	yes
[Ref.: #69480]	thermophile	no	88.28	yes
[Ref.: #69480]	glucose-util	yes	92.499	yes
[Ref.: #69480]	glucose-ferment	no	91.449	no

Availability in culture collections External links

[Ref.: #7957]

Culture collection no.

DSM 19185, JCM 14851, KACC 11904, Ky 101, NBRC 106418

[Ref.: #81090]

SI-ID 402247

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitratireductor kimnyeongensis sp. nov., isolated from seaweed.	Kang HS, Yang HL, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.65734-0	2009	*

References

#7957

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19185

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32588

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28802 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81090

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402247.1 )

#28802

IJSEM 1036 2009 ( DOI 10.1099/ijs.0.65734-0 , PubMed 19406788 )

* These data were automatically processed and therefore are not curated

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Nitratireductor kimnyeongensis KACC 11904

Nitratireductor kimnyeongensis KACC 11904

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