Hoeflea phototrophica DFL-43 | Type strain | DSM 17068, CIP 109233, CCUG 59890, NCIMB 14078 | BacDiveID:11870

Strain identifier

BacDive ID: 11870

Type strain:

Species: Hoeflea phototrophica

Strain Designation: DFL-43

Culture col. no.: DSM 17068, CIP 109233, CCUG 59890, NCIMB 14078

Strain history: <- H. Biebl <- M. Allgaier

NCBI tax ID(s): 244596 (species)

SI-ID 402271

DSM 17068

Section

Hoeflea phototrophica DFL-43 is an aerobe, mesophilic, motile bacterium that was isolated from marine sediment.

motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Hoeflea*
	Species	**Hoeflea phototrophica**
	Full Scientific Name (LPSN)	Hoeflea phototrophica Biebl et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.94

[Ref.: #31644]	Cell length	0.7-2 µm

[Ref.: #31644]	Cell width	0.3-0.5 µm

[Ref.: #31644]	Cell shape	rod-shaped

[Ref.: #31644]	Motility	yes

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6735]			growth	30 °C
[Ref.: #31644]			growth	0-33 °C
[Ref.: #31644]			optimum	31 °C

[Ref.: #6735]	Temperature range	mesophilic
[Ref.: #31644]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31644]			optimum	7
[Ref.: #31644]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #31644]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31644]		NaCl		growth	0.5-7	%
[Ref.: #31644]		NaCl		optimum	0.5-7	%

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31644]		acetate ChEBI	+	carbon source
[Ref.: #31644]		citrate ChEBI	+	carbon source
[Ref.: #31644]		fructose ChEBI	+	carbon source
[Ref.: #31644]		glucose ChEBI	+	carbon source
[Ref.: #31644]		glutamate ChEBI	+	carbon source
[Ref.: #31644]		glycerol ChEBI	+	carbon source
[Ref.: #31644]		lactate ChEBI	+	carbon source
[Ref.: #31644]		malate ChEBI	+	carbon source
[Ref.: #31644]		pyruvate ChEBI	+	carbon source
[Ref.: #31644]		succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31644]	Sample type/isolated from	marine sediment

[Ref.: #62154]	Sample type/isolated from	Cultured cells of Alexandrium ostenfeldii
[Ref.: #62154]	Sampling date	2002-04-01
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31644]	Hoeflea phototrophica DFL-43 partial 16S rRNA gene, strain DFL-43	AJ582088	800	GenBank	411684 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hoeflea phototrophica DFL-43	GCA_000154705	chromosome	GenBank	411684 tax ID	*
[Ref.: #66792]	Hoeflea phototrophica DFL-43	411684.3	wgs	PATRIC	411684 tax ID	*
[Ref.: #66792]	Hoeflea phototrophica DFL-43	2663763045	complete	JGI IMG/M	411684 tax ID	*

GC-content

59.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hoeflea phototrophica DFL-43 PATRIC: 411684.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

Culture collection no.

DSM 17068, CIP 109233, CCUG 59890, NCIMB 14078

[Ref.: #81087]	SI-ID 402271	*
[Ref.: #81088]	SI-ID 411216	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of a new nitrilase from Hoeflea phototrophica DFL-43 for a two-step one-pot synthesis of (S)-beta-amino acids.	Zhang ZJ, Cai RF, Xu JH	Appl Microbiol Biotechnol	10.1007/s00253-018-9057-7	2018	*
Transcriptome	Hoefavidin: A dimeric bacterial avidin with a C-terminal binding tail.	Avraham O, Meir A, Fish A, Bayer EA, Livnah O	J Struct Biol	10.1016/j.jsb.2015.06.020	2015	*
Phylogeny	Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea.	Jung MY, Shin KS, Kim S, Kim SJ, Park SJ, Kim JG, Cha IT, Kim MN, Rhee SK	Antonie Van Leeuwenhoek	10.1007/s10482-013-9876-6	2013	*
Phylogeny	Hoeflea suaedae sp. nov., an endophytic bacterium isolated from the root of the halophyte Suaeda maritima.	Chung EJ, Park JA, Pramanik P, Bibi F, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.045484-0	2012	*
Phylogeny	Lentilitoribacter donghaensis gen. nov., sp. nov., a slowly-growing alphaproteobacterium isolated from coastal seawater.	Park S, Lee JS, Lee KC, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9825-9	2012	*
Phylogeny	Pathway evolution by horizontal transfer and positive selection is accommodated by relaxed negative selection upon upstream pathway genes in purple bacterial carotenoid biosynthesis.	Klassen JL	J Bacteriol	10.1128/JB.01060-09	2009	*
Phylogeny	Hoeflea phototrophica sp. nov., a novel marine aerobic alphaproteobacterium that forms bacteriochlorophyll a.	Biebl H, Tindall BJ, Pukall R, Lunsdorf H, Allgaier M, Wagner-Dobler I	Int J Syst Evol Microbiol	10.1099/ijs.0.63958-0	2006	*
	Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43(T)).	Fiebig A, Pradella S, Petersen J, Michael V, Pauker O, Rohde M, Goker M, Klenk HP, Wagner-Dobler I	Stand Genomic Sci	10.4056/sigs.3486982	2013	*

References

#6735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17068

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31644

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27927 (see below)

#62154 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59890

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81087

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402271.1 )

#81088

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411216.1 )

#27927

IJSEM 821 2006 ( DOI 10.1099/ijs.0.63958-0 , PubMed 16585702 )

* These data were automatically processed and therefore are not curated

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