Name: Aminobacter aminovorans DSM 10368
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11858

Type strain:

Species: Aminobacter aminovorans

Culture col. no.: DSM 10368, ATCC 29600, NCIMB 13986, CIP 107712

Strain history: CIP <- 2002, ATCC, Chelobacter heintzii <- M. Firestone, strain: Pseudomonas sp.

NCBI tax ID(s): 83263 (species)

SI-ID 4327

LMG 11081, ATCC 29600, DSM 10368, KCTC 2477, NCIMB 13986, KACC 10889, CIP 107712

Other strains from Aminobacter aminovorans

A. aminovorans TK3001, TK 3001, DSM 7048, ATCC ... (type strain)
A. aminovorans TE8, DSM 6449
A. aminovorans TE9, DSM 6450
A. aminovorans TE10, DSM 6451
A. aminovorans NTA, DSM 14059, ATCC 27109
A. aminovorans TE4, DSM 6463
A. aminovorans TE5, DSM 6464
A. aminovorans TE6, DSM 6465
A. aminovorans TE7, DSM 6466

Section

Aminobacter aminovorans DSM 10368 is a mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Aminobacter*
	Species	**Aminobacter aminovorans**
	Full Scientific Name (LPSN)	Aminobacter aminovorans (den Dooren de Jong 1926) Urakami et al. 1992

	Synonym	Pseudomonas aminovorans
	Synonym	"Aminobacter* heintzii"*
	Synonym	Chelatobacter heintzii

Information on morphological and physiological properties Morphology

[Ref.: #116334]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #116334]	Cell shape	rod-shaped

[Ref.: #116334]	Motility	yes

[Ref.: #116334]	Pigment production	no
[Ref.: #116334]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3927]

Culture medium

PLATE COUNT AGAR (DSMZ Medium 464)

[Ref.: #3927]

Culture medium growth

[Ref.: #3927]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3927]

Culture medium composition

expand / minimize

[Ref.: #3927]

Culture medium

NITRILOTRIACETATE MEDIUM (DSMZ Medium 463)

[Ref.: #3927]

Culture medium growth

[Ref.: #3927]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3927]

Culture medium composition

expand / minimize

[Ref.: #33161]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33161]

Culture medium growth

[Ref.: #33161]

Culture medium composition

expand / minimize

[Ref.: #116334]

Culture medium

CIP Medium 72

[Ref.: #116334]

Culture medium growth

[Ref.: #116334]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3927]		growth	30 °C
[Ref.: #33161]		growth	30 °C
[Ref.: #116334]		growth	25-30 °C
[Ref.: #116334]	no	growth	5 °C
[Ref.: #116334]	no	growth	10 °C
[Ref.: #116334]	no	growth	37 °C
[Ref.: #116334]	no	growth	41 °C

[Ref.: #3927]	Temperature range	mesophilic
[Ref.: #33161]	Temperature range	mesophilic
[Ref.: #116334]	Temperature range	mesophilic
[Ref.: #116334]	Temperature range	psychrophilic
[Ref.: #116334]	Temperature range	mesophilic
[Ref.: #116334]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

[Ref.: #3927]	Name of produced compound	iminodiacetate dehydrogenase
[Ref.: #3927]	Name of produced compound	nitrilotriacetate monooxygenase

	Salt	Tested relation		Salt conc.
[Ref.: #116334]	NaCl		growth	0-4	%
[Ref.: #116334]	NaCl	no	growth	6	%
[Ref.: #116334]	NaCl	no	growth	8	%
[Ref.: #116334]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116334]	citrate ChEBI	-	carbon source
[Ref.: #116334]	esculin ChEBI	+	hydrolysis
[Ref.: #116334]	nitrate ChEBI	+	reduction
[Ref.: #116334]	nitrate ChEBI	-	respiration
[Ref.: #116334]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116334]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116334]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116334]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116334]	amylase	-
[Ref.: #116334]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116334]	caseinase	-	3.4.21.50
[Ref.: #116334]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116334]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116334]	gelatinase	-
[Ref.: #116334]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116334]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116334]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116334]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116334]	oxidase	+
[Ref.: #116334]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116334]	tryptophan deaminase	-
[Ref.: #116334]	tween esterase	+
[Ref.: #116334]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116334]	2397	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	+	-	-	-	-	+	+	-	+	+	-	+	-	+	+	-	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	+	+	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116334]	10591	-	+	+	+	-	+	-	-	+	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3927]	Sample type/isolated from	soil
[Ref.: #3927]	Country	USA
[Ref.: #3927]	Country ISO 3 Code	USA
[Ref.: #3927]	Continent	North America

[Ref.: #116334]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3927]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116334]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aminobacter aminovorans DSM 10368	GCA_014195595	scaffold	GenBank	83263 tax ID	*
[Ref.: #66792]	Aminobacter aminovorans strain DSM 10368	83263.15	wgs	PATRIC	83263 tax ID	*
[Ref.: #66792]	Chelatobacter heintzii DSM 10368	2827986130	draft	JGI IMG/M	83263 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aminobacter aminovorans DSM 10368 NCBI: GCA_014195595.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aminobacter aminovorans DSM 10368 NCBI: GCA_014195595.1
[Ref.: #69480]	flagellated	no	63.881	no
[Ref.: #69480]	gram-positive	no	98.105	no
[Ref.: #69480]	anaerobic	no	98.418	no
[Ref.: #69480]	aerobic	yes	90.518	no
[Ref.: #69480]	halophile	no	88.107	no
[Ref.: #69480]	spore-forming	no	94.989	no
[Ref.: #69480]	glucose-util	yes	93.752	no
[Ref.: #69480]	motile	yes	91.417	no
[Ref.: #69480]	glucose-ferment	no	90.951	no
[Ref.: #69480]	thermophile	no	99.21	yes

Availability in culture collections External links

[Ref.: #3927]

Culture collection no.

DSM 10368, ATCC 29600, NCIMB 13986, CIP 107712

[Ref.: #81076]

SI-ID 4327

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	In glucose-limited continuous culture the minimum substrate concentration for growth, Smin, is crucial in the competition between the enterobacterium Escherichia coli and Chelatobacter heintzii, an environmentally abundant bacterium.	Fuchslin HP, Schneider C, Egli T	ISME J	10.1038/ismej.2011.143	2011	*
Metabolism	Bacterial growth yields on EDTA, NTA, and their biodegradation intermediates.	Yuan Z, VanBriesen JM	Biodegradation	10.1007/s10532-007-9113-y	2007	*
Metabolism	Effect of metal complexation on the bioavailability of nitrilotriacetic acid to Chelatobacter heintzii ATCC 29600.	White VE, Knowles CJ	Arch Microbiol	10.1007/s002030000157	2000	*
Enzymology	Cloning, sequencing, and analysis of a gene cluster from Chelatobacter heintzii ATCC 29600 encoding nitrilotriacetate monooxygenase and NADH:flavin mononucleotide oxidoreductase.	Xu Y, Mortimer MW, Fisher TS, Kahn ML, Brockman FJ, Xun L	J Bacteriol	10.1128/jb.179.4.1112-1116.1997	1997	*
Enzymology	Cloning and characterization of the genes encoding nitrilotriacetate monooxygenase of Chelatobacter heintzii ATCC 29600.	Knobel HR, Egli T, van der Meer JR	J Bacteriol	10.1128/jb.178.21.6123-6132.1996	1996	*
Enzymology	Dynamics of Substrate Consumption and Enzyme Synthesis in Chelatobacter heintzii during Growth in Carbon-Limited Continuous Culture with Different Mixtures of Glucose and Nitrilotriacetate.	Bally M, Egli T	Appl Environ Microbiol	10.1128/aem.62.1.133-140.1996	1996	*
Enzymology	Growth and regulation of enzyme synthesis in the nitrilotriacetic acid (NTA)-degrading bacterium Chelatobacter heintzii ATCC 29600.	Bally M, Wilberg E, Kuhni M, Egli T	Microbiology (Reading)	10.1099/13500872-140-8-1927	1994	*

References

#3927

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10368

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33161 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81076

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4327.1 )

#116334 Collection of Institut Pasteur ; Curators of the CIP; CIP 107712
* These data were automatically processed and therefore are not curated

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