Name: Paenibacillus provencensis 4401170
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11631

Type strain:

Species: Paenibacillus provencensis

Strain Designation: 4401170

Culture col. no.: DSM 22280, CCUG 53519, CIP 109358

Strain history: CIP <- 2006, V. Roux, Timone Hosp., Marseille, France: strain 4401170

NCBI tax ID(s): 441151 (species)

SI-ID 343459

CCUG 53519, CIP 109358, DSM 22280

Section

Paenibacillus provencensis 4401170 is an aerobe, spore-forming, mesophilic human pathogen that was isolated from Human cerebrospinal fluid, 54-yr-old man.

Gram-negative
motile
rod-shaped
spore-forming
aerobe
human pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus provencensis**
	Full Scientific Name (LPSN)	Paenibacillus provencensis Roux et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32267]	Gram stain	negative
[Ref.: #121975]	Gram stain	positive

[Ref.: #32267]	Cell length	3.05 µm

[Ref.: #32267]	Cell width	0.95 µm

[Ref.: #32267]	Cell shape	rod-shaped
[Ref.: #121975]	Cell shape	rod-shaped

[Ref.: #32267]	Motility	yes
[Ref.: #121975]	Motility	no

[Ref.: #32267]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16175]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16175]

Culture medium growth

[Ref.: #16175]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16175]

Culture medium composition

expand / minimize

[Ref.: #37527]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37527]

Culture medium growth

[Ref.: #37527]

Culture medium composition

expand / minimize

[Ref.: #121975]

Culture medium

CIP Medium 72

[Ref.: #121975]

Culture medium growth

[Ref.: #121975]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16175]	growth	35 °C
[Ref.: #32267]	growth	30-37 °C
[Ref.: #32267]	optimum	33.5 °C
[Ref.: #37527]	growth	37 °C
[Ref.: #59922]	growth	37 °C

[Ref.: #16175]	Temperature range	mesophilic
[Ref.: #32267]	Temperature range	mesophilic
[Ref.: #37527]	Temperature range	mesophilic
[Ref.: #59922]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32267]	Oxygen tolerance	aerobe
[Ref.: #59922]	Oxygen tolerance	aerobe
[Ref.: #121975]	Oxygen tolerance	obligate aerobe

[Ref.: #32267]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32267]		NaCl		growth	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32267]	esculin ChEBI	+	hydrolysis
[Ref.: #121975]	nitrate ChEBI	-	reduction
[Ref.: #121975]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121975]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32267]	catalase	+	1.11.1.6
[Ref.: #121975]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121975]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121975]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121975]	11814	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16175]	Sample type/isolated from	Human cerebrospinal fluid, 54-yr-old man
[Ref.: #16175]	Geographic location (country and/or sea, region)	Timone hospital
[Ref.: #16175]	Country	France
[Ref.: #16175]	Country ISO 3 Code	FRA
[Ref.: #16175]	Continent	Europe

[Ref.: #59922]	Sample type/isolated from	Human cerebrospinal fluid,54-yr-old man
[Ref.: #59922]	Sampling date	2004-04-01
[Ref.: #59922]	Geographic location (country and/or sea, region)	Marseille,Timone hospital
[Ref.: #59922]	Country	France
[Ref.: #59922]	Country ISO 3 Code	FRA
[Ref.: #59922]	Continent	Europe

[Ref.: #121975]	Sample type/isolated from	Human, Cerebrospinal liquid
[Ref.: #121975]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #121975]	Country	France
[Ref.: #121975]	Country ISO 3 Code	FRA
[Ref.: #121975]	Continent	Europe
[Ref.: #121975]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Host	#Human	#Male
#Host Body Product	#Fluids	#Cerebrospinal fluid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF212893 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	471
Soil Samples	1804
Animal Samples	1869
Plant Samples	1590
Total Samples	5734

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16175]	Pathogenicity (human)	yes, in single cases
[Ref.: #16175]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121975]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16175]	Paenibacillus provencensis strain 4401170 16S ribosomal RNA gene, partial sequence	EF212893	1457	ENA	441151 tax ID

Availability in culture collections External links

[Ref.: #16175]

Culture collection no.

DSM 22280, CCUG 53519, CIP 109358

[Ref.: #80856]

SI-ID 343459

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus shunpengii sp. nov., isolated from farmland soil.	Yang YJ, Zhang YT, Chen GQ, Cheng D, Qiu JG, He Q, He J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002484	2017	*
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008	*

References

#16175

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22280

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32267

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28508 (see below)

#37527 ; Curators of the CIP;
#59922 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53519

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80856

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343459.1 )

#121975 Collection of Institut Pasteur ; Curators of the CIP; CIP 109358

#28508

IJSEM 682 2008 ( DOI 10.1099/ijs.0.65228-0 , PubMed 18319478 )

* These data were automatically processed and therefore are not curated

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