Paenibacillus provencensis (DSM 22280, CCUG 53519, CIP 109358)

Name: Paenibacillus provencensis (DSM 22280, CCUG 53519, CIP 109358)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11631

Type strain

Strain Designation 4401170

Culture col. no. DSM 22280 CCUG 53519 CIP 109358 4401170

NCBI tax ID(s) 441151

Special Collections DSMZ CCUG CIP Literature strains

History 2006, V. Roux, Timone Hosp., Marseille, France: strain 4401170 <- CCUG; CCUG 53519 <- V. Roux; Timone hospital, Marseille, France; 4401170 CIP <- 2006, V. Roux, Timone Hosp., Marseille, France: strain 4401170

Links

Paenibacillus provencensis 4401170 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from Human cerebrospinal fluid, 54-yr-old man.

spore-forming Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 343459

CCUG 53519,CIP 109358,DSM 22280

@ref 20215

Last LPSN update 2026-02-09 11:20:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus provencensis

Full scientific name Paenibacillus provencensis Roux et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32267	negative	3.05 µm	0.95 µm	rod-shaped
121975	positive			rod-shaped

Pigmentation

32267

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16175	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
37527	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121975	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16175	positive	growth	35	mesophilic
32267	positive	growth	30-37	mesophilic
32267	positive	optimum	33.5	mesophilic
37527	positive	growth	37	mesophilic
59922	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32267	aerobe
59922	aerobe
121975	obligate aerobe

Spore formation

32267

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32267	NaCl	positive	growth	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32267	4853 ChEBI	esculin	+	hydrolysis
121975	17632 ChEBI	nitrate	-	reduction
121975	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121975	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32267	catalase	+	1.11.1.6
121975	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121975	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
121975	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121975	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Fluids	#Cerebrospinal fluid

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
16175	Human cerebrospinal fluid, 54-yr-old man		Timone hospital	France	FRA	Europe
59922	Human cerebrospinal fluid,54-yr-old man	2004-04-01	Marseille,Timone hospital	France	FRA	Europe
121975	Human, Cerebrospinal liquid		Marseille	France	FRA	Europe	2004

Taxonmaps

69479

Global distribution of 16S sequence EF212893 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	471
Soil Samples	1804
Animal Samples	1869
Plant Samples	1590
Total Samples	5734

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
16175	yes, in single cases	1	Risk group (German classification) According to TRBA 466
121975		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267854v1 assembly for Paenibacillus provencensis CCUG 53519	contig	GCA_042678545	441151	73.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16175	Paenibacillus provencensis strain 4401170 16S ribosomal RNA gene, partial sequence	EF212893	1457		441151

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus shunpengii sp. nov., isolated from farmland soil.	Yang YJ, Zhang YT, Chen GQ, Cheng D, Qiu JG, He Q, He J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002484	2017
Phylogeny	Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine.	Roux V, Fenner L, Raoult D	Int J Syst Evol Microbiol	10.1099/ijs.0.65228-0	2008

References

#16175	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22280
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28508	IJSEM 682 2008 ( DOI 10.1099/ijs.0.65228-0 , PubMed 18319478 )
#32267	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28508
#37527	; Curators of the CIP;
#59922	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53519
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121975	Collection of Institut Pasteur ; Curators of the CIP; CIP 109358
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus provencensis (DSM 22280, CCUG 53519, CIP 109358)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042678545

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media