Name: Rhodococcus triatomae DSM 44892
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11039

Type strain:

Species: Rhodococcus triatomae

Culture col. no.: DSM 44892, CCUG 50202, IMMIB RIV-085, JCM 13396, NBRC 103116

Strain history: CCUG 50202 <-- A. F. Yassin IMMIB RIV-085 <-- Inst. Zool. Parasitol., Bochum, Germany.

NCBI tax ID(s): 1219026 (strain), 300028 (species)

SI-ID 215155

CCUG 50202, DSM 44892, JCM 13396, NBRC 103116

Special Collections

Other strains from Rhodococcus triatomae

Section

When using BacDive for research please cite our paper

Rhodococcus triatomae DSM 44892 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from blood sucking bug Triatome.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Rhodococcus*
	Species	**Rhodococcus triatomae**
	Full Scientific Name (LPSN)	Rhodococcus triatomae Yassin 2005

Information on morphological and physiological properties Morphology

[Ref.: #31444]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %98.2

[Ref.: #31444]	Cell shape	rod-shaped

[Ref.: #125438]	Motility	no Confidence in %93

[Ref.: #20136]	Colony color	Beige (1001)
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 2

[Ref.: #20136]	Colony color	Colorless
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 3

[Ref.: #20136]	Colony color	Colorless
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 4

[Ref.: #20136]	Colony color	Beige (1001)
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 5

[Ref.: #20136]	Colony color	Sand yellow (1002)
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 6

[Ref.: #20136]	Colony color	Beige (1001)
[Ref.: #20136]	Incubation period	10-14 days
[Ref.: #20136]	Cultivation medium used	ISP 7

[Ref.: #31444]

Pigment production

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 2

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 3

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 4

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 5

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 6

[Ref.: #20136]	Multicellular complex forming ability	no
[Ref.: #20136]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12177]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12177]

Culture medium growth

[Ref.: #12177]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12177]

Culture medium composition

expand / minimize

[Ref.: #12177]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12177]

Culture medium growth

[Ref.: #12177]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12177]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 2

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 3

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 4

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 5

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 6

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

[Ref.: #20136]

Culture medium

ISP 7

[Ref.: #20136]

Culture medium growth

[Ref.: #20136]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12177]	growth	28 °C
[Ref.: #20136]	optimum	28 °C
[Ref.: #31444]	growth	22-42 °C
[Ref.: #31444]	optimum	32 °C
[Ref.: #58784]	growth	22-37 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31444]	Oxygen tolerance	aerobe
[Ref.: #58784]	Oxygen tolerance	aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %92.659
[Ref.: #125439]	Oxygen tolerance	aerobe Confidence in %94.8

[Ref.: #31444]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31444]	acetate ChEBI	+	carbon source
[Ref.: #20136]	arabinose ChEBI	-
[Ref.: #20136]	cellulose ChEBI	-
[Ref.: #31444]	citrate ChEBI	+	carbon source
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #20136]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #20136]	glucose ChEBI	+
[Ref.: #31444]	glucose ChEBI	+	carbon source
[Ref.: #20136]	mannitol ChEBI	-
[Ref.: #20136]	myo-inositol ChEBI	-
[Ref.: #20136]	raffinose ChEBI	-
[Ref.: #20136]	rhamnose ChEBI	-
[Ref.: #20136]	sucrose ChEBI	-
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #20136]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #31444]	urease	+	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #20136]	450	not determinedn.d.	-	-	+	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20136]	917	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	chorismate metabolism	100	9 of 9
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	purine metabolism	76.6	72 of 94
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	phenol degradation	70	14 of 20
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	oxidative phosphorylation	68.13	62 of 91
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	64.71	11 of 17
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	grixazone biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	daunorubicin biosynthesis	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	chlorophyll metabolism	38.89	7 of 18
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12177]	Sample type/isolated from	blood sucking bug Triatome

[Ref.: #58784]	Sample type/isolated from	Blood sucking insect of the Triatome

[Ref.: #67770]	Sample type/isolated from	Blood-sucking bug (Triatoma sp.)
[Ref.: #67770]	Host species	Triatoma sp.
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF410371 (>99% sequence identity) for Rhodococcus triatomae subclade from Microbeatlas

Aquatic Samples	749
Soil Samples	101
Animal Samples	238
Plant Samples	5
Total Samples	1093

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12177]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20136]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12177]	Rhodococcus triatomae partial 16S rRNA gene, type strain IMMIB RIV-085	AJ854055	1486	GenBank ENA	300028 tax ID
[Ref.: #20218]	Rhodococcus triatomae strain DSM 44892 16S ribosomal RNA gene, partial sequence	KF410371	1377	GenBank ENA	300028 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus triatomae DSM 44892	GCA_900099725	contig	GenBank ENA	300028 tax ID
[Ref.: #67770]	Rhodococcus triatomae NBRC 103116	GCA_001894965	contig	GenBank ENA	1219026 tax ID
[Ref.: #66792]	Rhodococcus triatomae NBRC 103116	1219026.3	wgs	PATRIC	1219026 tax ID	*
[Ref.: #66792]	Rhodococcus triatomae strain DSM 44892	300028.5	wgs	PATRIC	300028 tax ID	*
[Ref.: #66792]	Rhodococcus triatomae strain DSM 44892	300028.7	complete	PATRIC	300028 tax ID	*
[Ref.: #66792]	Rhodococcus triatomae NBRC 103116	2903944193	draft	JGI IMG/M	1219026 tax ID	*

[Ref.: #67770]

GC-content

68.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodococcus triatomae DSM 44892 NCBI: GCA_014217785.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.038	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	98.873	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	92.659	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	50.804	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.978	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhodococcus triatomae DSM 44892 NCBI: GCA_014217785
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	94.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	83.5
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	58.1

Availability in culture collections External links

[Ref.: #12177]

Culture collection no.

DSM 44892, CCUG 50202, IMMIB RIV-085, JCM 13396, NBRC 103116

[Ref.: #80291]

SI-ID 215155

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodococcus olei sp. nov., with the ability to degrade petroleum oil, isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002750	2018	*
Phylogeny	Rhodococcus psychrotolerans sp. nov., isolated from rhizosphere of Deschampsia antarctica.	Silva LJ, Souza DT, Genuario DB, Hoyos HAV, Santos SN, Rosa LH, Zucchi TD, Melo IS	Antonie Van Leeuwenhoek	10.1007/s10482-017-0983-7	2017	*
Phylogeny	Rhodococcus pedocola sp. nov. and Rhodococcus humicola sp. nov., two antibiotic-producing actinomycetes isolated from soil.	Nguyen TM, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001039	2016	*
Phylogeny	Rhodococcus canchipurensis sp. nov., an actinomycete isolated from a limestone deposit site.	Nimaichand S, Sanasam S, Zheng LQ, Zhu WY, Yang LL, Tang SK, Ningthoujam DS, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.036087-0	2012	*
Phylogeny	Rhodococcus triatomae sp. nov., isolated from a blood-sucking bug.	Yassin AF	Int J Syst Evol Microbiol	10.1099/ijs.0.63571-0	2005	*

References

#12177

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44892

#20136

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31444

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27748 (see below)

#58784 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50202

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80291

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215155.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27748

IJSEM 1575 2005 ( DOI 10.1099/ijs.0.63571-0 , PubMed 16014484 )

* These data were automatically processed and therefore are not curated

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