[Ref.: #11743] |
Sample type/isolated from |
joint abscess of a 56 year old man with a complete endoprosthesis of one of his knees |
[Ref.: #11743] |
Geographic location (country and/or sea, region) |
Hannover |
[Ref.: #11743] |
Country |
Germany |
[Ref.: #11743] |
Country ISO 3 Code |
DEU |
[Ref.: #11743] |
Continent |
Europe |
[Ref.: #11743] |
Geographic location |
52.3705°/9.7332° |
|
[Ref.: #56995] |
Sample type/isolated from |
Human abscess |
|
[Ref.: #67770] |
Sample type/isolated from |
Joint abscess of a 56-year-old male patient with a complete endoprosthesis in one of his knees |
|
[Ref.: #115982] |
Sample type/isolated from |
Human, Abscess |
* marker position based on {}
|
|
Isolation sources categories |
#Infection |
#Patient |
- |
#Host Body-Site |
#Other |
#Abscess |
#Host Body-Site |
#Limb |
#Joint |
#Host Body-Site |
#Limb |
#Leg |
#Host |
#Human |
#Male |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #11743] |
Nocardia abscessus strain IMMIB D-1592T 16S ribosomal RNA gene, partial sequence |
AF218292 |
1457 |
|
1206723 tax ID |
[Ref.: #20218] |
Nocardia abscessus strain DSM 44432 16S ribosomal RNA gene, partial sequence |
AY544980 |
606 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 16S ribosomal RNA gene, partial sequence |
DQ659895 |
1400 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236316 |
644 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236317 |
644 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236318 |
644 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 clone 4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236319 |
644 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus strain ATCC BAA-279 clone 5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
GU236320 |
644 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
N.asteroides 16S rRNA gene (ATCC 23824) |
X84851 |
1412 |
|
1824 tax ID |
* |
[Ref.: #20218] |
Nocardia asteroides clone A1 16S ribosomal RNA gene, partial sequence |
AY262328 |
500 |
|
1824 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus NBRC 100374 16S ribosomal RNA gene, partial sequence |
GQ376194 |
1441 |
|
1206723 tax ID |
* |
[Ref.: #20218] |
Nocardia abscessus NBRC 100374 strain DSM 44432 16S ribosomal RNA gene, partial sequence |
JN041489 |
462 |
|
1206723 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Nocardia abscessus NBRC 100374 |
GCA_000308455 |
contig |
|
1206723 tax ID |
[Ref.: #66792] |
Nocardia abscessus NBRC 100374 |
1206723.4 |
wgs |
|
1206723 tax ID |
* |
[Ref.: #66792] |
Nocardia abscessus NBRC 100374 |
2551306170 |
draft |
|
1206723 tax ID |
* |
|
[Ref.: #67770] |
GC-content |
68.2 mol% |
genome sequence analysis |
[Ref.: #67770] |
GC-content |
67.9 mol% |
high performance liquid chromatography (HPLC) |
|
-
Availability in culture collections External links
[Ref.: #11743] |
Culture collection no. |
DSM 44432, ATCC 23824, ATCC BAA-279, IMMIB D-1599, IMMIB N-63, JCM 10984, NBRC 100374, CCUG 45938, CIP 106822, IMMIB D-1592, CGMCC 4.1723, IFM 10029 |
[Ref.: #79999] |
SI-ID 46629
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Genomic Virulence Features of Two Novel Species Nocardia barduliensis sp. nov. and Nocardia gipuzkoensis sp. nov., Isolated from Patients with Chronic Pulmonary Diseases. |
Nouioui I, Cortes-Albayay C, Neumann-Schaal M, Vicente D, Cilla G, Klenk HP, Marimon JM, Ercibengoa M |
Microorganisms |
10.3390/microorganisms8101517 |
2020 |
* |
Metabolism |
Isolation of Nabscessin C from Nocardia abscessus IFM 10029(T) and a Study on Biosynthetic Pathway for Nabscessins. |
Hara S, Hara Y, Arai MA, Kusuya Y, Takahashi H, Yaguchi T, Ishibashi M |
Chem Pharm Bull (Tokyo) |
10.1248/cpb.c18-00430 |
2018 |
* |
Phylogeny |
Nabscessins A and B, Aminocyclitol Derivatives from Nocardia abscessus IFM 10029(T). |
Hara S, Ishikawa N, Hara Y, Nehira T, Sakai K, Gonoi T, Ishibashi M |
J Nat Prod |
10.1021/acs.jnatprod.6b00935 |
2017 |
* |
Phylogeny |
Nocardia abscessus sp. nov. |
Yassin AF, Rainey FA, Mendrock U, Brzezinka H, Schaal KP |
Int J Syst Evol Microbiol |
10.1099/00207713-50-4-1487 |
2000 |
* |
|
- References
-
#11743 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 44432
|
-
-
-
-
#33810 |
; Curators of the CIP;
|
-
#39591 |
; Curators of the CIP;
|
-
#56995 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 45938
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68379 |
Automatically annotated from API Coryne .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#79999 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID46629.1 )
|
-
#115982 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 106822
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|