Name: Gordonia hankookensis ON-33
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10621

Type strain:

Species: Gordonia hankookensis

Strain Designation: ON-33

Culture col. no.: DSM 45645, CCUG 57507, KCTC 19599, JCM 16947

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 589403 (species)

SI-ID 398216

DSM 45645, CCUG 57507

Section

Gordonia hankookensis ON-33 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from wastewater treatment plant.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	**Gordonia hankookensis**
	Full Scientific Name (LPSN)	Gordonia hankookensis Park et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29362]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29362]	Motility	no

[Ref.: #61353]

Incubation period

7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17969]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17969]

Culture medium growth

[Ref.: #17969]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17969]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17969]	growth	28 °C
[Ref.: #29362]	growth	10-37 °C
[Ref.: #29362]	optimum	30 °C
[Ref.: #61353]	growth	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #17969]	Temperature range	mesophilic
[Ref.: #29362]	Temperature range	mesophilic
[Ref.: #61353]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29362]			optimum	7.0-7.5
[Ref.: #29362]			growth	4.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29362]	Oxygen tolerance	aerobe
[Ref.: #61353]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29362]	esculin ChEBI	+	hydrolysis
[Ref.: #29362]	gluconate ChEBI	+	carbon source
[Ref.: #29362]	L-arabitol ChEBI	+	carbon source
[Ref.: #29362]	leucine ChEBI	+	carbon source
[Ref.: #29362]	nitrate ChEBI	+	reduction
[Ref.: #29362]	rhamnose ChEBI	+	carbon source
[Ref.: #29362]	ribitol ChEBI	+	carbon source
[Ref.: #29362]	ribose ChEBI	+	carbon source
[Ref.: #29362]	tween 20 ChEBI	+	carbon source
[Ref.: #29362]	tween 40 ChEBI	+	carbon source
[Ref.: #29362]	tween 60 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17969]	Sample type/isolated from	wastewater treatment plant
[Ref.: #17969]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #17969]	Country	Republic of Korea
[Ref.: #17969]	Country ISO 3 Code	KOR
[Ref.: #17969]	Continent	Asia

[Ref.: #61353]	Sample type/isolated from	Soil around wastewater treatment plant
[Ref.: #61353]	Sampling date	2006-01-01
[Ref.: #61353]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #61353]	Country	Republic of Korea
[Ref.: #61353]	Country ISO 3 Code	KOR
[Ref.: #61353]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil around a wastewater treatment plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17969]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17969]	Gordonia hankookensis strain ON-33 16S ribosomal RNA gene, partial sequence	FJ572038	1476	ENA	589403 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gordonia hankookensis ON-33	GCA_014673215	contig	GenBank	589403 tax ID	*

[Ref.: #17969]	GC-content	66.9 mol%
[Ref.: #67770]	GC-content	66.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gordonia hankookensis ON-33 NCBI: GCA_014673215.1
[Ref.: #69480]	flagellated	no	98.544	yes
[Ref.: #69480]	gram-positive	yes	89.539	no
[Ref.: #69480]	anaerobic	no	99.518	no
[Ref.: #69480]	aerobic	yes	88.584	yes
[Ref.: #69480]	halophile	no	83.189	no
[Ref.: #69480]	spore-forming	no	84.384	no
[Ref.: #69480]	glucose-util	yes	89.365	no
[Ref.: #69480]	thermophile	no	99.314	yes
[Ref.: #69480]	motile	no	95.617	no
[Ref.: #69480]	glucose-ferment	no	87.467	no

Availability in culture collections External links

[Ref.: #17969]

Culture collection no.

DSM 45645, CCUG 57507, KCTC 19599, JCM 16947

[Ref.: #79893]

SI-ID 398216

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gordonia hankookensis sp. nov., isolated from soil.	Park S, Kang SJ, Kim W, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.011585-0	2009	*

References

#17969

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45645

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29362

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25773 (see below)

#61353 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57507

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398216.1 )

#25773

IJSEM 3172 2009 ( DOI 10.1099/ijs.0.011585-0 , PubMed 19643878 )

* These data were automatically processed and therefore are not curated

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