Name: Gordonia hydrophobica 1610/1b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10579

Type strain:

Species: Gordonia hydrophobica

Strain Designation: 1610/1b

Culture col. no.: DSM 44015, ATCC 700089, CIP 104672, IFO 16057, NBRC 16057, CCUG 38497, CECT 7021, JCM 10086, BCRC 16394, KCTC 9814, PCM 2575

Strain history: CIP <- 1995, DSMZ <- 1991, B. Bendinger, Osnabrück Univ., Osnabrück, Germany <- Biofilter

NCBI tax ID(s): 1223541 (strain), 40516 (species)

SI-ID 43766

ATCC 700089, DSM 44015, CIP 104672, CCUG 38497, JCM 10086, IFO 16057, KCTC 9814, NBRC 16057, CECT 7021, BCRC 16394, CCRC 16394

Other strains from Gordonia hydrophobica

G. hydrophobica ST033325(HKI),

Section

Gordonia hydrophobica 1610/1b is an aerobe, mesophilic bacterium that was isolated from compost biofilter for waste gas purification of animal rendering plant emissions.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	**Gordonia hydrophobica**
	Full Scientific Name (LPSN)	Gordonia hydrophobica corrig. Bendinger et al. 1995

Synonym

Gordona hydrophobica

Information on morphological and physiological properties Morphology

[Ref.: #120010]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120010]	Cell shape	rod-shaped

[Ref.: #120010]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.262

[Ref.: #19992]	Colony color	Pastel yellow (1034)
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 2

[Ref.: #19992]	Colony color	Colorless
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 3

[Ref.: #19992]	Colony color	Pastel yellow (1034)
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 4

[Ref.: #19992]	Colony color	Colorless
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 5

[Ref.: #19992]	Colony color	Pastel yellow (1034)
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 6

[Ref.: #19992]	Colony color	Colorless
[Ref.: #19992]	Incubation period	10-14 days
[Ref.: #19992]	Cultivation medium used	ISP 7

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 2

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 3

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 4

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 5

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 6

[Ref.: #19992]	Multicellular complex forming ability	no
[Ref.: #19992]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11457]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11457]

Culture medium growth

[Ref.: #11457]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11457]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 2

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 3

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 4

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 5

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 6

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #19992]

Culture medium

ISP 7

[Ref.: #19992]

Culture medium growth

[Ref.: #19992]

Culture medium composition

expand / minimize

[Ref.: #41265]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41265]

Culture medium growth

[Ref.: #41265]

Culture medium composition

expand / minimize

[Ref.: #120010]

Culture medium

CIP Medium 3

[Ref.: #120010]

Culture medium growth

[Ref.: #120010]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11457]		growth	28 °C
[Ref.: #41265]		growth	30 °C
[Ref.: #54292]		growth	22-37 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120010]		growth	30-41 °C
[Ref.: #120010]	no	growth	10 °C
[Ref.: #120010]	no	growth	45 °C

[Ref.: #11457]	Temperature range	mesophilic
[Ref.: #41265]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120010]	Temperature range	psychrophilic
[Ref.: #120010]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54292]	Oxygen tolerance	aerobe
[Ref.: #120010]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19992]		NaCl		maximum	7.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #120010]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #120010]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #120010]	nitrate ChEBI	+	reduction
[Ref.: #120010]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #120010]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E, API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #120010]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #120010]	acetoin ChEBI	-
[Ref.: #120010]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120010]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120010]	amylase	-
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #120010]	beta-galactosidase	-	3.2.1.23
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API 20E, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #120010]	caseinase	-	3.4.21.50
[Ref.: #120010]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120010]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120010]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120010]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #120010]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120010]	lipase	-
[Ref.: #120010]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120010]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #120010]	oxidase	-
[Ref.: #120010]	protease	-
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120010]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #120010]	tween esterase	-
[Ref.: #120010]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19992]	590	-	+	+	+	+	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120010]	761	not determinedn.d.	+	+	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19992]	376	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19992]	783	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	+	-	-	-
[Ref.: #120010]	8114	-	+	+	+	-	+	-	+	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11457]	Sample type/isolated from	compost biofilter for waste gas purification of animal rendering plant emissions
[Ref.: #11457]	Geographic location (country and/or sea, region)	Lingen
[Ref.: #11457]	Country	Germany
[Ref.: #11457]	Country ISO 3 Code	DEU
[Ref.: #11457]	Continent	Europe

[Ref.: #54292]	Sample type/isolated from	Compost biofilter,waste gas purification

[Ref.: #67770]	Sample type/isolated from	Tree bark compost of biofilter for waste gas purification of animal rendering plant emissions

[Ref.: #120010]	Sample type/isolated from	Environment, Compost biofilter for waste gas treatment
[Ref.: #120010]	Geographic location (country and/or sea, region)	Lingen
[Ref.: #120010]	Country	Germany
[Ref.: #120010]	Country ISO 3 Code	DEU
[Ref.: #120010]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Engineered	#Biodegradation	#Composting
#Engineered	#Bioremediation	#Biofilter
#Engineered	#Waste	#Waste gas

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11457]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19992]	Biosafety level	1	German classification
[Ref.: #120010]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Gordonia hydrophobica strain DSM 44015 16S ribosomal RNA gene, partial sequence	KF410337	1385	ENA	40516 tax ID	*
[Ref.: #20218]	G.hydrophobica DNA for 16S ribosomal RNA	X87340	1470	ENA	40516 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gordonia hydrophobica NBRC 16057	GCA_001592365	contig	GenBank	1223541 tax ID
[Ref.: #66792]	Gordonia hydrophobica NBRC 16057	1223541.3	wgs	PATRIC	1223541 tax ID	*
[Ref.: #66792]	Gordonia hydrophobica NBRC 16057	2675903489	draft	JGI IMG/M	1223541 tax ID	*

[Ref.: #11457]	GC-content	69 mol%
[Ref.: #67770]	GC-content	69 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	67.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gordonia hydrophobica NBRC 16057 PATRIC: 1223541.3
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gordonia hydrophobica NBRC 16057 PATRIC: 1223541.3
[Ref.: #69480]	motile	no	95.579	no
[Ref.: #69480]	gram-positive	yes	91.333	no
[Ref.: #69480]	anaerobic	no	99.566	yes
[Ref.: #69480]	aerobic	yes	89.107	no
[Ref.: #69480]	halophile	no	90.608	no
[Ref.: #69480]	spore-forming	no	82.631	no
[Ref.: #69480]	glucose-util	yes	89.382	no
[Ref.: #69480]	flagellated	no	98.863	no
[Ref.: #69480]	thermophile	no	97.718	yes
[Ref.: #69480]	glucose-ferment	no	86.242	yes

Availability in culture collections External links

[Ref.: #11457]

Culture collection no.

DSM 44015, ATCC 700089, CIP 104672, IFO 16057, NBRC 16057, CCUG 38497, CECT 7021, JCM 10086, BCRC 16394, KCTC 9814, PCM 2575

[Ref.: #79854]

SI-ID 43766

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gordonia phthalatica sp. nov., a di-n-butyl phthalate-degrading bacterium isolated from activated sludge.	Jin D, Kong X, Jia M, Yu X, Wang X, Zhuang X, Deng Y, Bai Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002430	2017	*
Phylogeny	Gordonia alkaliphila sp. nov., an actinomycete isolated from tidal flat sediment.	Cha JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.039289-0	2012	*
Phylogeny	Gordonia phosphorivorans sp. nov., isolated from a wastewater bioreactor with phosphorus removal.	Kampfer P, Martin K, Dott W	Int J Syst Evol Microbiol	10.1099/ijs.0.037093-0	2012	*
Phylogeny	Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant.	Srinivasan S, Park G, Yang H, Hwang S, Bae Y, Jung YA, Kim MK, Lee M	Int J Syst Evol Microbiol	10.1099/ijs.0.029736-0	2012	*
Phylogeny	Gordonia shandongensis sp. nov., isolated from soil in China.	Luo H, Gu Q, Xie J, Hu C, Liu Z, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64536-0	2007	*
Phylogeny	Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor.	Kim KK, Lee CS, Kroppenstedt RM, Stackebrandt E, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.02224-0	2003	*

References

#11457

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44015

#19992

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41265 ; Curators of the CIP;
#54292 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38497

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43766.1 )

#120010 Collection of Institut Pasteur ; Curators of the CIP; CIP 104672
* These data were automatically processed and therefore are not curated

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Gordonia hydrophobica NBRC 16057

Gordonia hydrophobica NBRC 16057

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