Name: Gulbenkiania mobilis E4FC31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10519

Type strain:

Species: Gulbenkiania mobilis

Strain Designation: E4FC31

Culture col. no.: DSM 18507, CCUG 54946, LMG 23770

Strain history: <- C. M. Manaia; E4FC31

NCBI tax ID(s): 397457 (species)

SI-ID 292102

LMG 23770, DSM 18507, CCUG 54946

Section

Gulbenkiania mobilis E4FC31 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from treated wastewater.

Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Gulbenkiania*
	Species	**Gulbenkiania mobilis**
	Full Scientific Name (LPSN)	Gulbenkiania mobilis Vaz-Moreira et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31964]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #31964]	Cell length	0.95 µm

[Ref.: #31964]	Cell width	0.38 µm

[Ref.: #31964]	Cell shape	rod-shaped

[Ref.: #31964]	Motility	yes

[Ref.: #31964]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7566]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #7566]

Culture medium growth

[Ref.: #7566]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7566]

Culture medium composition

expand / minimize

[Ref.: #7566]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7566]

Culture medium growth

[Ref.: #7566]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7566]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7566]	growth	30 °C
[Ref.: #31964]	growth	15-45 °C
[Ref.: #31964]	optimum	30 °C
[Ref.: #60406]	growth	30 °C

[Ref.: #7566]	Temperature range	mesophilic
[Ref.: #31964]	Temperature range	mesophilic
[Ref.: #60406]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31964]			optimum	7.25
[Ref.: #31964]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31964]	Oxygen tolerance	facultative aerobe
[Ref.: #60406]	Oxygen tolerance	aerobe

[Ref.: #31964]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31964]		NaCl		growth	<3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31964]	decanoate ChEBI	+	carbon source
[Ref.: #31964]	glutamate ChEBI	+	carbon source
[Ref.: #31964]	lactate ChEBI	+	carbon source
[Ref.: #31964]	leucine ChEBI	+	carbon source
[Ref.: #31964]	malate ChEBI	+	carbon source
[Ref.: #31964]	nitrate ChEBI	+	reduction
[Ref.: #31964]	proline ChEBI	+	carbon source
[Ref.: #31964]	succinate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31964]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31964]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31964]		catalase	+	1.11.1.6
[Ref.: #31964]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7566]	Sample type/isolated from	treated wastewater
[Ref.: #7566]	Geographic location (country and/or sea, region)	Porto
[Ref.: #7566]	Country	Portugal
[Ref.: #7566]	Country ISO 3 Code	PRT
[Ref.: #7566]	Continent	Europe

[Ref.: #60406]	Sample type/isolated from	Treated waistwater
[Ref.: #60406]	Geographic location (country and/or sea, region)	Porto
[Ref.: #60406]	Country	Portugal
[Ref.: #60406]	Country ISO 3 Code	PRT
[Ref.: #60406]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM295491 (>99% sequence identity) for Gulbenkiania from Microbeatlas

Aquatic Samples	2445
Soil Samples	208
Animal Samples	4350
Plant Samples	361
Total Samples	7364

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7566]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7566]	Gulbenkiania mobilis 16S rRNA gene, type strain E4FC31T	AM295491	1498	ENA	397457 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gulbenkiania mobilis strain DSM 18507	397457.6	wgs	PATRIC	397457 tax ID	*
[Ref.: #66792]	Gulbenkiania mobilis DSM 18507	2799112276	draft	JGI IMG/M	397457 tax ID	*

[Ref.: #31964]

GC-content

63 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gulbenkiania mobilis strain DSM 18507 PATRIC: 397457.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gulbenkiania mobilis strain DSM 18507 PATRIC: 397457.6
[Ref.: #69480]	gram-positive	no	98.581	yes
[Ref.: #69480]	anaerobic	no	97.631	yes
[Ref.: #69480]	halophile	no	93.338	no
[Ref.: #69480]	spore-forming	no	94.251	yes
[Ref.: #69480]	glucose-util	yes	76.868	no
[Ref.: #69480]	aerobic	yes	75.008	no
[Ref.: #69480]	motile	yes	92.586	yes
[Ref.: #69480]	flagellated	yes	87.674	no
[Ref.: #69480]	thermophile	no	96.817	no
[Ref.: #69480]	glucose-ferment	no	90.4	no

Availability in culture collections External links

[Ref.: #7566]

Culture collection no.

DSM 18507, CCUG 54946, LMG 23770

[Ref.: #79795]

SI-ID 292102

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudogulbenkiania gefcensis sp. nov., isolated from soil.	Lee DG, Im DM, Kang H, Yun P, Park SK, Hyun SS, Hwang DY	Int J Syst Evol Microbiol	10.1099/ijs.0.040873-0	2012	*
Phylogeny	Gulbenkiania indica sp. nov., isolated from a sulfur spring.	Jyoti V, Narayan KD, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.014035-0	2009	*
Phylogeny	Pseudogulbenkiania subflava gen. nov., sp. nov., isolated from a cold spring.	Lin MC, Chou JH, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65755-0	2008	*
Phylogeny	Paludibacterium yongneupense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea.	Kwon SW, Kim BY, Kim WG, Yoo KH, Yoo SH, Son JA, Weon HY	Int J Syst Evol Microbiol	10.1099/ijs.0.64831-0	2008	*
Phylogeny	Gulbenkiania mobilis gen. nov., sp. nov., isolated from treated municipal wastewater.	Vaz-Moreira I, Nobre MF, Nunes OC, Manaia CM	Int J Syst Evol Microbiol	10.1099/ijs.0.64726-0	2007	*

References

#7566

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31964

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28219 (see below)

#60406 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54946

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#79795

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID292102.1 )

#28219

IJSEM 1108 2007 ( DOI 10.1099/ijs.0.64726-0 , PubMed 17473267 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Gulbenkiania mobilis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Gulbenkiania mobilis strain DSM 18507

Gulbenkiania mobilis strain DSM 18507

Change proposal

Change proposal