Simonsiella muelleri (DSM 2579, ATCC 29453, CCUG 30554)

Name: Simonsiella muelleri (DSM 2579, ATCC 29453, CCUG 30554)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10504

Type strain

Strain Designation 36

Culture col. no. DSM 2579 ATCC 29453 CCUG 30554 36 CIP 103436 2 more

NCBI tax ID(s) 641147 72

Special Collections DSMZ CCUG CIP

History <- ATCC <- D.A. Kuhn, 36 CIP <- 1990, ATCC <- D.A. Kuhn: strain 36

Links

Simonsiella muelleri 36 is an aerobe bacterium that was isolated from human.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4973

LMG 7828,ATCC 29453,DSM 2579,CCUG 30554,CIP 103436

@ref 20215

Last LPSN update 2026-02-09 11:20:16

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Simonsiella

Species Simonsiella muelleri

Full scientific name Simonsiella muelleri Schmid 1922 (Approved Lists 1980)

Synonyms (1)

"Caryophanon muelleri"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.47

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1129	COLUMBIA BLOOD AGAR (DSMZ Medium 429)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
1129	SIMONSIELLA MEDIUM (DSMZ Medium 303)	Medium recipe at MediaDive	Name: SIMONSIELLA MEDIUM (DSMZ Medium 303) Composition: Trypticase 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Yeast extract 4.0 g/l Phytone 3.0 g/l K2HPO4 2.5 g/l Horse serum Distilled water
40640	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
1129	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
121170	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1129	positive	growth	37
40640	positive	growth	37
50145	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
50145	aerobe
50145	microaerophile
125439	obligate aerobe	95.2

Spore formation

@ref	Spore formation	Confidence
125438		91.176
125439		98

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	+		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	methylglyoxal degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	NAD metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	proline metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	lipoate biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	purine metabolism	59.57	56 of 94
66794	glycolysis	58.82	10 of 17
66794	alanine metabolism	58.62	17 of 29
66794	d-mannose degradation	55.56	5 of 9
66794	leucine metabolism	53.85	7 of 13
66794	oxidative phosphorylation	53.85	49 of 91
66794	lipid metabolism	51.61	16 of 31
66794	pyrimidine metabolism	51.11	23 of 45
66794	sulfopterin metabolism	50	2 of 4
66794	adipate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	non-pathway related	50	19 of 38
66794	heme metabolism	50	7 of 14
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	Entner Doudoroff pathway	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	tyrosine metabolism	50	7 of 14
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B6 metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	serine metabolism	44.44	4 of 9
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin B1 metabolism	38.46	5 of 13
66794	pantothenate biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	degradation of sugar alcohols	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	urea cycle	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	starch degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	histidine metabolism	24.14	7 of 29
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	sulfate reduction	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22
66794	degradation of hexoses	22.22	4 of 18
66794	degradation of pentoses	21.43	6 of 28

Fatty acid profile

Metadata FA analysis

@ref

50145

Fatty acid	Percentage	ECL
C14:0	32.9	14
C16:1 ω7c	24.8	15.819
C12:0	14.6	12
C12:0 3OH	6.9	13.455
C16:0	6.4	16
C13:0 ISO 2OH	4	13.814
C18:1 ω7c /12t/9t	3.5	17.824
C14:0 3OH/C16:1 ISO I	3.2	15.485
C12:0 ALDE ?	2	10.915
C18:2 ω6,9c/C18:0 ANTE	1.7	17.724

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
50145	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
50145	-	+	-	-	-	-	-	+	-	-	-	-	-
1129	-	+	-	-	-	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

@ref	Sample type
1129	human
50145	Human
121170	Human

Taxonmaps

69479

Global distribution of 16S sequence AF328147 (>99% sequence identity) for Simonsiella muelleri subclade from Microbeatlas

Aquatic Samples	234
Soil Samples	101
Animal Samples	5045
Plant Samples	18
Total Samples	5398

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1129	1	Risk group (German classification) According to TRBA 466
121170	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Simonsiella muelleri strain DSM 2579	complete		72.14		72	98.24
66792	Simonsiella muelleri strain DSM 2579	complete		72.13		72	98.24
66792	ASM2016227v1 assembly for Simonsiella muelleri DSM 2579	complete	GCA_020162275	72.12	8062103679	72	98
66792	ASM295183v1 assembly for Simonsiella muelleri ATCC 29453	complete	GCA_002951835	641147.8		641147	95.28
66792	Simo_muel_ATCC_29453_V2 assembly for Simonsiella muelleri ATCC 29453	scaffold	GCA_000163775	641147.3	2562617187	641147	61.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Simonsiella muelleri strain ATCC29453T 16S ribosomal RNA gene, partial sequence	AF328147	1465		641147

GC content

1129

GC-content (mol%)40.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Simonsiella muelleri ATCC 29453
NCBI: GCA_002951835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	78.50	no
125439	gram_stain	BacteriaNetⓘ	negative	76.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Simonsiella muelleri ATCC 29453 ATCC 29453
NCBI: GCA_002951835.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.47	no
125438	anaerobic	anaerobicⓘ	no	92.72	yes
125438	aerobic	aerobicⓘ	yes	50.42	no
125438	spore-forming	spore-formingⓘ	no	91.18	no
125438	thermophilic	thermophileⓘ	no	95.49	no
125438	flagellated	motile2+ⓘ	no	85.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evolution of longitudinal division in multicellular bacteria of the Neisseriaceae family.	Nyongesa S, Weber PM, Bernet E, Pulido F, Nieves C, Nieckarz M, Delaby M, Viehboeck T, Krause N, Rivera-Millot A, Nakamura A, Vischer NOE, vanNieuwenhze M, Brun YV, Cava F, Bulgheresi S, Veyrier FJ.	Nat Commun	10.1038/s41467-022-32260-w	2022
	Simonsiella muelleri alpha2,6-sialyltransferase enables efficient biosynthesis of 6'-sialyllactose in both plasmid-dependent and plasmid-free engineered Escherichia coli.	Liu Y, Zhu Y, Qiao L, Yu L, Lin Q, Xu W, Zhang W, Mu W.	Int J Biol Macromol	10.1016/j.ijbiomac.2025.145718	2025
	Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus.	Morreale DP, St Geme Iii JW, Planet PJ.	Microbiol Spectr	10.1128/spectrum.03123-23	2023
	Engineered domain-inlaid Nme2Cas9 adenine base editors with increased on-target DNA editing and targeting scope.	Zhao D, Gao X, Zhou J, Li J, Qian Y, Wang D, Niu W, Zhang T, Hu M, Xiong H, Lai L, Li Z.	BMC Biol	10.1186/s12915-023-01754-4	2023
	Oral Microbiota, a Potential Determinant for the Treatment Efficacy of Gastric Helicobacter pylori Eradication in Humans.	Chen H, Xie H, Shao D, Chen L, Chen S, Wang L, Han X.	Pol J Microbiol	10.33073/pjm-2022-020	2022
Pathogenicity	Identification of the mutual gliding locus as a factor for gut colonization in non-native bee hosts using the ARTP mutagenesis.	Meng Y, Zhang X, Zhai Y, Li Y, Shao Z, Liu S, Zhang C, Xing XH, Zheng H.	Microbiome	10.1186/s40168-024-01813-0	2024
Phylogeny	Identification of integrative and conjugative elements in pathogenic and commensal Neisseriaceae species via genomic distributions of DNA uptake sequence dialects.	Hughes-Games A, Roberts AP, Davis SA, Hill DJ.	Microb Genom	10.1099/mgen.0.000372	2020
	Previously uncharacterized rectangular bacterial structures in the dolphin mouth.	Dudek NK, Galaz-Montoya JG, Shi H, Mayer M, Danita C, Celis AI, Viehboeck T, Wu GH, Behr B, Bulgheresi S, Huang KC, Chiu W, Relman DA.	Nat Commun	10.1038/s41467-023-37638-y	2023
Metabolism	Potent Cas9 Inhibition in Bacterial and Human Cells by AcrIIC4 and AcrIIC5 Anti-CRISPR Proteins.	Lee J, Mir A, Edraki A, Garcia B, Amrani N, Lou HE, Gainetdinov I, Pawluk A, Ibraheim R, Gao XD, Liu P, Davidson AR, Maxwell KL, Sontheimer EJ.	mBio	10.1128/mbio.02321-18	2018
Phylogeny	Dialects of the DNA uptake sequence in Neisseriaceae.	Frye SA, Nilsen M, Tonjum T, Ambur OH.	PLoS Genet	10.1371/journal.pgen.1003458	2013
	A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene.	Farrugia DN, Elbourne LD, Mabbutt BC, Paulsen IT.	Nucleic Acids Res	10.1093/nar/gkv337	2015
Genetics	Closely related type II-C Cas9 orthologs recognize diverse PAMs.	Wei J, Hou L, Liu J, Wang Z, Gao S, Qi T, Gao S, Sun S, Wang Y.	Elife	10.7554/elife.77825	2022
Metabolism	Natural competence and the evolution of DNA uptake specificity.	Mell JC, Redfield RJ.	J Bacteriol	10.1128/jb.01293-13	2014
	Common Cell Shape Evolution of Two Nasopharyngeal Pathogens.	Veyrier FJ, Biais N, Morales P, Belkacem N, Guilhen C, Ranjeva S, Sismeiro O, Pehau-Arnaudet G, Rocha EP, Werts C, Taha MK, Boneca IG.	PLoS Genet	10.1371/journal.pgen.1005338	2015
	Molecular and virulence characteristics of an outer membrane-associated RTX exoprotein in Pasteurella pneumotropica.	Sasaki H, Ishikawa H, Sato T, Sekiguchi S, Amao H, Kawamoto E, Matsumoto T, Shirama K.	BMC Microbiol	10.1186/1471-2180-11-55	2011
	Bioinformatics Identification of Anti-CRISPR Loci by Using Homology, Guilt-by-Association, and CRISPR Self-Targeting Spacer Approaches.	Yin Y, Yang B, Entwistle S.	mSystems	10.1128/msystems.00455-19	2019
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Aquella oligotrophica gen. nov. sp. nov.: A new member of the family Neisseriaceae isolated from laboratory tap water.	Chan KG, See-Too WS, Chua KO, Peix A, Goh KM, Hong KW, Yin WF, Lee LS.	Microbiologyopen	10.1002/mbo3.793	2019
Phylogeny	Phylogenetic analysis of family Neisseriaceae based on genome sequences and description of Populibacter corticis gen. nov., sp. nov., a member of the family Neisseriaceae, isolated from symptomatic bark of Populus × euramericana canker.	Li Y, Xue H, Sang SQ, Lin CL, Wang XZ.	PLoS One	10.1371/journal.pone.0174506	2017
Phylogeny	Bordetella holmesii sp. nov., a new gram-negative species associated with septicemia.	Weyant RS, Hollis DG, Weaver RE, Amin MF, Steigerwalt AG, O'Connor SP, Whitney AM, Daneshvar MI, Moss CW, Brenner DJ.	J Clin Microbiol	10.1128/jcm.33.1.1-7.1995	1995

References

#1129	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2579
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40640	; Curators of the CIP;
#50145	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30554
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121170	Collection of Institut Pasteur ; Curators of the CIP; CIP 103436
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Simonsiella muelleri (DSM 2579, ATCC 29453, CCUG 30554)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Fatty acid profile

API zym

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020162275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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