Strain identifier
BacDive ID: 979
Type strain:
Species: Bacillus subtilis
Strain history: <- J. Glazyrina, Technische Universität Berlin
NCBI tax ID(s): 1423 (species)
version 9.1 (current version)
General
@ref: 15672
BacDive-ID: 979
DSM-Number: 21393
keywords: genome sequence, Bacteria, spore-forming, Gram-positive, human pathogen
description: Bacillus subtilis DSM 21393 is a spore-forming, Gram-positive human pathogen that was isolated from Potato tubers.
NCBI tax id
- NCBI tax id: 1423
- Matching level: species
strain history
- @ref: 15672
- history: <- J. Glazyrina, Technische Universität Berlin
doi: 10.13145/bacdive979.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus subtilis
- full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio subtilis
@ref: 15672
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus subtilis
full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872
type strain: no
Culture and growth conditions
culture medium
- @ref: 15672
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 15672
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 95.429
Isolation, sampling and environmental information
isolation
- @ref: 15672
- sample type: Potato tubers
- geographic location: Tatarstan
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 15672
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacillus subtilis DSM 21393
- accession: GCA_029537095
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1423
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 84.481 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 87.953 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 72.268 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 95.429 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.174 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 88.277 | no |
External links
@ref: 15672
culture collection no.: DSM 21393
straininfo link
- @ref: 70652
- straininfo: 405784
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
15672 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21393) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21393 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
70652 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405784.1 | StrainInfo: A central database for resolving microbial strain identifiers |