Strain identifier

BacDive ID: 979

Type strain: No

Species: Bacillus subtilis

Strain history: <- J. Glazyrina, Technische Universität Berlin

NCBI tax ID(s): 1423 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15672

BacDive-ID: 979

DSM-Number: 21393

keywords: genome sequence, Bacteria, spore-forming, Gram-positive, human pathogen

description: Bacillus subtilis DSM 21393 is a spore-forming, Gram-positive human pathogen that was isolated from Potato tubers.

NCBI tax id

  • NCBI tax id: 1423
  • Matching level: species

strain history

  • @ref: 15672
  • history: <- J. Glazyrina, Technische Universität Berlin

doi: 10.13145/bacdive979.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus subtilis
  • full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Vibrio subtilis

@ref: 15672

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus subtilis

full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872

type strain: no

Culture and growth conditions

culture medium

  • @ref: 15672
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 15672
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 95.429

Isolation, sampling and environmental information

isolation

  • @ref: 15672
  • sample type: Potato tubers
  • geographic location: Tatarstan
  • country: Russia
  • origin.country: RUS
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 15672
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Bacillus subtilis DSM 21393
  • accession: GCA_029537095
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1423

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes84.481no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no87.953no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes72.268no
69480spore-formingspore-formingAbility to form endo- or exosporesyes95.429no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.174yes
69480flagellatedmotile2+Ability to perform flagellated movementyes88.277no

External links

@ref: 15672

culture collection no.: DSM 21393

straininfo link

  • @ref: 70652
  • straininfo: 405784

Reference

@idauthorscataloguedoi/urltitle
15672Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21393)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21393
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
70652Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405784.1StrainInfo: A central database for resolving microbial strain identifiers