Strain identifier

BacDive ID: 8611

Type strain: Yes

Species: Mycoplasma mycoides subsp. capri

Strain Designation: PG3

Strain history: CIP <- 1971, P. Perreau: strain PG3 <- H.P. Chu

NCBI tax ID(s): 40477 (subspecies)

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General

@ref: 16048

BacDive-ID: 8611

DSM-Number: 22061

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Mycoplasma mycoides subsp. capri PG3 is a mesophilic animal pathogen that was isolated from goat, pleuropneumonia.

NCBI tax id

  • NCBI tax id: 40477
  • Matching level: subspecies

strain history

@refhistory
16048<- CIP <- P. Perreau; PG3 <- H. P. Chu
121211CIP <- 1971, P. Perreau: strain PG3 <- H.P. Chu

doi: 10.13145/bacdive8611.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Mycoplasmatales
  • family: Mycoplasmataceae
  • genus: Mycoplasma
  • species: Mycoplasma mycoides subsp. capri
  • full scientific name: Mycoplasma mycoides subsp. capri (Edward 1953) Freundt 1955 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Asterococcus mycoides subsp. capri

@ref: 16048

domain: Bacteria

phylum: Tenericutes

class: Mollicutes

order: Mycoplasmatales

family: Mycoplasmataceae

genus: Mycoplasma

species: Mycoplasma mycoides subsp. capri

full scientific name: Mycoplasma mycoides subsp. capri (Edward 1953) Freundt 1955 emend. Manso-Silván et al. 2009

strain designation: PG3

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16048SP4-Z MEDIUM (DSMZ Medium 1076b)yeshttps://mediadive.dsmz.de/medium/1076bName: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
33480MEDIUM 88 - for Mycoplasma and AcholeplasmayesDistilled water make up to (670.000 ml);PPLO broth (17.000 g);Sterile supplement - M00273 (210.000 ml);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml)
121211CIP Medium 88yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=88

culture temp

@refgrowthtypetemperaturerange
16048positivegrowth37mesophilic
33480positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample type
16048goat, pleuropneumonia
121211Animal, Goat, pleuropneumonia

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Oral cavity and airways#Lung

taxonmaps

  • @ref: 69479
  • File name: preview.99_653.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_109;96_405;97_458;98_527;99_653&stattab=map
  • Last taxonomy: Mycoplasma
  • 16S sequence: U26036
  • Sequence Identity:
  • Total samples: 4646
  • soil counts: 14
  • aquatic counts: 107
  • animal counts: 4511
  • plant counts: 14

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
16048yes2Risk group (German classification)
1212112Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16048
  • description: Mycoplasma mycoides capri PG3 16S ribosomal RNA (rrnA) gene, partial sequence
  • accession: U26036
  • length: 1466
  • database: ena
  • NCBI tax ID: 40477

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycoplasma mycoides subsp. capri PG3GCA_000339035scaffoldncbi1188246
66792Mycoplasma mycoides subsp. capri PG3GCA_000590435contigncbi1188246
66792Mycoplasma mycoides subsp. capri PG31188246.3wgspatric1188246
66792Mycoplasma mycoides subsp. capri PG31188246.5wgspatric1188246
66792Mycoplasma mycoides subsp. capri PG3GCA_018389705completencbi40477

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.024no
gram-positiveyes72.871no
anaerobicno96.285no
aerobicno96.639no
halophileno51.075no
spore-formingno98.563no
thermophileno92.868no
glucose-utilyes91.713no
motileno93.71no
glucose-fermentyes81.957no

External links

@ref: 16048

culture collection no.: DSM 22061, CCUG 23387, CIP 71.25, NCTC 10137

straininfo link

  • @ref: 77994
  • straininfo: 69416

Reference

@idauthorscataloguedoi/urltitle
16048Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22061)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22061
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33480Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10595
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77994Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID69416.1StrainInfo: A central database for resolving microbial strain identifiers
121211Curators of the CIPCollection of Institut Pasteur (CIP 71.25)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2071.25