Name: Mycoplasma mycoides subsp. capri PG3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8611

Type strain:

Species: Mycoplasma mycoides subsp. capri

Strain Designation: PG3

Culture col. no.: DSM 22061, CCUG 23387, CIP 71.25, NCTC 10137

Strain history: CIP <- 1971, P. Perreau: strain PG3 <- H.P. Chu

NCBI tax ID(s): 40477 (subspecies)

SI-ID 69416

CCUG 23387, NCTC 10137, CIP 71.25, DSM 22061

Section

Mycoplasma mycoides subsp. capri PG3 is a mesophilic animal pathogen that was isolated from goat, pleuropneumonia.

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Mycoplasmataceae*
	Genus	*Mycoplasma*
	Species	**Mycoplasma mycoides subsp. capri**
	Full Scientific Name (LPSN)	Mycoplasma mycoides subsp. capri (Edward 1953) Freundt 1955 (Approved Lists 1980)

Synonym

"Asterococcus mycoides subsp. capri"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16048]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #16048]

Culture medium growth

[Ref.: #16048]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16048]

Culture medium composition

expand / minimize

[Ref.: #33480]

Culture medium

MEDIUM 88 - for Mycoplasma and Acholeplasma

[Ref.: #33480]

Culture medium growth

[Ref.: #33480]

Culture medium composition

expand / minimize

[Ref.: #121211]

Culture medium

CIP Medium 88

[Ref.: #121211]

Culture medium growth

[Ref.: #121211]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16048]			growth	37 °C
[Ref.: #33480]			growth	37 °C

[Ref.: #16048]	Temperature range	mesophilic
[Ref.: #33480]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16048]	Sample type/isolated from	goat, pleuropneumonia

[Ref.: #121211]	Sample type/isolated from	Animal, Goat, pleuropneumonia
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Oral cavity and airways	#Lung

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U26036 (>99% sequence identity) for Mycoplasma from Microbeatlas

Aquatic Samples	107
Soil Samples	14
Animal Samples	4511
Plant Samples	14
Total Samples	4646

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16048]	Pathogenicity (animal)	yes
[Ref.: #16048]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121211]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16048]	Mycoplasma mycoides capri PG3 16S ribosomal RNA (rrnA) gene, partial sequence	U26036	1466	ENA	40477 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycoplasma mycoides subsp. capri PG3	GCA_000339035	scaffold	GenBank	1188246 tax ID	*
[Ref.: #66792]	Mycoplasma mycoides subsp. capri PG3	GCA_000590435	contig	GenBank	1188246 tax ID	*
[Ref.: #66792]	Mycoplasma mycoides subsp. capri PG3	1188246.3	wgs	PATRIC	1188246 tax ID	*
[Ref.: #66792]	Mycoplasma mycoides subsp. capri PG3	1188246.5	wgs	PATRIC	1188246 tax ID	*
[Ref.: #66792]	Mycoplasma mycoides subsp. capri PG3	GCA_018389705	complete	GenBank	40477 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycoplasma mycoides subsp. capri PG3 NCBI: GCA_018389705.1
[Ref.: #69480]	flagellated	no	98.024	no
[Ref.: #69480]	gram-positive	yes	72.871	no
[Ref.: #69480]	anaerobic	no	96.285	no
[Ref.: #69480]	aerobic	no	96.639	no
[Ref.: #69480]	halophile	no	51.075	no
[Ref.: #69480]	spore-forming	no	98.563	no
[Ref.: #69480]	thermophile	no	92.868	no
[Ref.: #69480]	glucose-util	yes	91.713	no
[Ref.: #69480]	motile	no	93.71	no
[Ref.: #69480]	glucose-ferment	yes	81.957	no

Availability in culture collections External links

[Ref.: #16048]

Culture collection no.

DSM 22061, CCUG 23387, CIP 71.25, NCTC 10137

[Ref.: #77994]

SI-ID 69416

References

#16048

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22061

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33480 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77994

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID69416.1 )

#121211 Collection of Institut Pasteur ; Curators of the CIP; CIP 71.25
* These data were automatically processed and therefore are not curated

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