Strain identifier

BacDive ID: 86

Type strain: No

Species: Komagataeibacter xylinus

Strain history: IAM 14352 (Acetobacter pasteurianus) <-- NCIB 5346 (Acetobacter aceti subsp. xylinum) <-- NCTC 5346 ("Acetobacter acetigenum") <-- O. Verona.

NCBI tax ID(s): 28448 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 732

BacDive-ID: 86

DSM-Number: 2325

keywords: genome sequence, Bacteria, mesophilic, polysaccharide production

description: Komagataeibacter xylinus DSM 2325 is a mesophilic bacterium that produces polysaccharides.

NCBI tax id

  • NCBI tax id: 28448
  • Matching level: species

strain history

@refhistory
732<- NCIB (Acetobacter aceti subsp. xylinum) <- O. Verona (Acetobacter acetigenum)
67770IAM 14352 (Acetobacter pasteurianus) <-- NCIB 5346 (Acetobacter aceti subsp. xylinum) <-- NCTC 5346 ("Acetobacter acetigenum") <-- O. Verona.

doi: 10.13145/bacdive86.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter xylinus
  • full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013

  • synonyms

    @refsynonym
    20215Komagatabacter xylinus
    20215Bacterium xylinum
    20215Acetobacter xylinus
    20215Gluconoacetobacter xylinus
    20215Acetobacter aceti subsp. xylinus
    20215Acetobacter xylinum
    20215Acetobacter aceti subsp. xylinum
    20215Gluconacetobacter xylinus

@ref: 732

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter xylinus

full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.779
6948099.985negative

Culture and growth conditions

culture medium

  • @ref: 732
  • name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/105
  • composition: Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
732positivegrowth26mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no100

compound production

@refcompound
732cellulose
732acetic acid

observation

  • @ref: 67770
  • observation: quinones: Q-10

Safety information

risk assessment

  • @ref: 732
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Komagataeibacter xylinus DSM 2325GCA_004006375chromosomencbi28448
66792Komagataeibacter xylinus strain DSM 232528448.17completepatric28448
66792Komagataeibacter xylinus DSM 23252841172115completeimg28448

GC content

  • @ref: 732
  • GC-content: 58.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.249no
gram-positiveno96.112no
anaerobicno98.212no
halophileno91.906no
spore-formingno95.646no
glucose-utilyes90.512no
flagellatedno96.848no
aerobicyes79.83no
thermophileno96.554yes
glucose-fermentno85.917no

External links

@ref: 732

culture collection no.: DSM 2325, ATCC 11142, NCIB 5346, JCM 21166, CECT 473, IAM 14352, LMD 75.1, LMG 1518, LMG 1538, NCIMB 5346, NCTC 5346

straininfo link

  • @ref: 69769
  • straininfo: 92075

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19542117Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii.Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos PInt J Syst Evol Microbiol10.1099/ijs.0.005157-02009Acetobacteraceae/*classification/genetics/isolation & purification, *Amplified Fragment Length Polymorphism Analysis, *Bacterial Typing Techniques, DNA Fingerprinting/*methods, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Deoxyribonucleases, Type II Site-Specific/metabolism, Food Microbiology, Genes, rRNA, Genotype, Gluconacetobacter/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Genetics31433066Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber.Jang WD, Kim TY, Kim HU, Shim WY, Ryu JY, Park JH, Lee SYBiotechnol Bioeng10.1002/bit.271502019*Cellulose/biosynthesis/genetics, *Genome, Bacterial, *Genomics, *Gram-Positive Asporogenous Rods, Irregular/genetics/metabolism, *Metabolomics, *NanofibersMetabolism

Reference

@idauthorscataloguedoi/urltitle
732Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2325)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2325
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69769Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92075.1StrainInfo: A central database for resolving microbial strain identifiers