Strain identifier
BacDive ID: 86
Type strain: 
Species: Acetobacter aceti subsp. xylinus
Strain history: IAM 14352 (Acetobacter pasteurianus) <-- NCIB 5346 (Acetobacter aceti subsp. xylinum) <-- NCTC 5346 ("Acetobacter acetigenum") <-- O. Verona.
NCBI tax ID(s): 28448 (species)
version 9.3 (current version)
General
@ref: 732
BacDive-ID: 86
DSM-Number: 2325
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, polysaccharide production
description: Acetobacter aceti subsp. xylinus DSM 2325 is a mesophilic, Gram-negative bacterium that produces polysaccharides.
NCBI tax id
- NCBI tax id: 28448
- Matching level: species
strain history
| @ref | history |
|---|---|
| 732 | <- NCIB (Acetobacter aceti subsp. xylinum) <- O. Verona (Acetobacter acetigenum) |
| 67770 | IAM 14352 (Acetobacter pasteurianus) <-- NCIB 5346 (Acetobacter aceti subsp. xylinum) <-- NCTC 5346 ("Acetobacter acetigenum") <-- O. Verona. |
doi: 10.13145/bacdive86.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter aceti subsp. xylinus
- full scientific name: Acetobacter aceti subsp. xylinus corrig. (Brown 1886) De Ley and Frateur 1974 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter aceti subsp. xylinum 20215 Gluconoacetobacter xylinus 20215 Acetobacter xylinum 20215 Gluconacetobacter xylinus 20215 Komagataeibacter xylinus 20215 Komagatabacter xylinus 20215 Bacterium xylinum 20215 Acetobacter xylinus
@ref: 732
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter xylinus
full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 97.333 |
| 125439 | negative | 97 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 732 | GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) | yes | https://mediadive.dsmz.de/medium/105 | Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water |
| 732 | YPM MEDIUM (DSMZ Medium 360) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium360.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 732 | positive | growth | 26 |
| 67770 | positive | growth | 25 |
| 732 | positive | growth | 25 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.055 |
| 125439 | no | 95.7 |
compound production
| @ref | compound |
|---|---|
| 732 | cellulose |
| 732 | acetic acid |
observation
- @ref: 67770
- observation: quinones: Q-10
Safety information
risk assessment
- @ref: 732
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Komagataeibacter xylinus DSM 2325 | GCA_004006375 | chromosome | ncbi | 28448 |
| 66792 | Komagataeibacter xylinus strain DSM 2325 | 28448.17 | complete | patric | 28448 |
| 66792 | Komagataeibacter xylinus DSM 2325 | 2841172115 | complete | img | 28448 |
GC content
- @ref: 732
- GC-content: 58.4
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.333 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.996 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.055 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.228 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.066 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 59.662 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 95.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 72 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 77.7 |
External links
@ref: 732
culture collection no.: DSM 2325, ATCC 11142, NCIB 5346, JCM 21166, CECT 473, IAM 14352, LMD 75.1, LMG 1518, LMG 1538, NCIMB 5346, NCTC 5346
straininfo link
- @ref: 69769
- straininfo: 92075
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19542117 | Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii. | Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos P | Int J Syst Evol Microbiol | 10.1099/ijs.0.005157-0 | 2009 | Acetobacteraceae/*classification/genetics/isolation & purification, *Amplified Fragment Length Polymorphism Analysis, *Bacterial Typing Techniques, DNA Fingerprinting/*methods, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Deoxyribonucleases, Type II Site-Specific/metabolism, Food Microbiology, Genes, rRNA, Genotype, Gluconacetobacter/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Genetics | 31433066 | Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber. | Jang WD, Kim TY, Kim HU, Shim WY, Ryu JY, Park JH, Lee SY | Biotechnol Bioeng | 10.1002/bit.27150 | 2019 | *Cellulose/biosynthesis/genetics, *Genome, Bacterial, *Genomics, *Gram-Positive Asporogenous Rods, Irregular/genetics/metabolism, *Metabolomics, *Nanofibers | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 732 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2325) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2325 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69769 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92075.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |