Name: Komagataeibacter xylinus DSM 2325
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 86

Type strain:

Species: Komagataeibacter xylinus

Culture col. no.: DSM 2325, ATCC 11142, NCIB 5346, JCM 21166, CECT 473, IAM 14352, LMD 75.1, LMG 1518, LMG 1538, NCIMB 5346, NCTC 5346

Strain history: IAM 14352 (Acetobacter pasteurianus) <-- NCIB 5346 (Acetobacter aceti subsp. xylinum) <-- NCTC 5346 ("Acetobacter acetigenum") <-- O. Verona.

NCBI tax ID(s): 28448 (species)

SI-ID 92075

LMG 1518, ATCC 11142, CECT 473, DSM 2325, LMG 1538, NCIB 5346, NCTC 5346, NCIMB 5346, LMD 75.1, CCRC 12334, BCRC 12334, IAM 14352, LMD 75, NCIM 2526, NRRL B-469, JCM 21166

Other strains from Komagataeibacter xylinus

K. xylinus DSM 6513, ATCC 23767, BCC 7226, ... (type strain)
K. xylinus B 4168, DSM 2004, ATCC 23768, NCIB ...
K. xylinus Blackley strain G2, BU 335, DSM ...
K. xylinus East Africa, DSM 46605, ATCC 14851, ...
K. xylinus DSM 46590, IMET 10141
K. xylinus DSM 46591, IMET 10142
K. xylinus BU 134, DSM 46603, ATCC 10821, ...
K. xylinus JCM 10150
K. xylinus JCM 7664, IFO 13693, NBRC 13693

Section

Komagataeibacter xylinus DSM 2325 is a mesophilic bacterium that produces polysaccharides.

polysaccharide production
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter xylinus**
	Full Scientific Name (LPSN)	Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013

	Synonym	"Komagatabacter* xylinus"*
	Synonym	"Bacterium* xylinum"*
	Synonym	Acetobacter xylinus
	Synonym	Gluconoacetobacter xylinus
	Synonym	Acetobacter aceti subsp. xylinus
	Synonym	Acetobacter xylinum
	Synonym	Acetobacter aceti subsp. xylinum
	Synonym	Gluconacetobacter xylinus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #69480]	Motility	no Confidence in %93.779

Information on culture and growth conditions Culture and growth conditions

[Ref.: #732]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #732]

Culture medium growth

[Ref.: #732]

Culture medium link

Medium recipe at MediaDive

[Ref.: #732]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #732]			growth	26 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #732]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #732]	Name of produced compound	cellulose
[Ref.: #732]	Name of produced compound	acetic acid

[Ref.: #67770]

Observation

quinones: Q-10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #732]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Komagataeibacter xylinus DSM 2325	GCA_004006375	chromosome	GenBank	28448 tax ID	*
[Ref.: #66792]	Komagataeibacter xylinus strain DSM 2325	28448.17	complete	PATRIC	28448 tax ID	*
[Ref.: #66792]	Komagataeibacter xylinus DSM 2325	2841172115	complete	JGI IMG/M	28448 tax ID	*

[Ref.: #732]

GC-content

58.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Komagataeibacter xylinus strain DSM 2325 PATRIC: 28448.17
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter xylinus strain DSM 2325 PATRIC: 28448.17
[Ref.: #69480]	motile	no	86.249	no
[Ref.: #69480]	gram-positive	no	96.112	no
[Ref.: #69480]	anaerobic	no	98.212	no
[Ref.: #69480]	halophile	no	91.906	no
[Ref.: #69480]	spore-forming	no	95.646	no
[Ref.: #69480]	glucose-util	yes	90.512	no
[Ref.: #69480]	flagellated	no	96.848	no
[Ref.: #69480]	aerobic	yes	79.83	no
[Ref.: #69480]	thermophile	no	96.554	yes
[Ref.: #69480]	glucose-ferment	no	85.917	no

Availability in culture collections External links

[Ref.: #732]

Culture collection no.

DSM 2325, ATCC 11142, NCIB 5346, JCM 21166, CECT 473, IAM 14352, LMD 75.1, LMG 1518, LMG 1538, NCIMB 5346, NCTC 5346

[Ref.: #69769]

SI-ID 92075

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii.	Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.005157-0	2009	*
Genetics	Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber.	Jang WD, Kim TY, Kim HU, Shim WY, Ryu JY, Park JH, Lee SY	Biotechnol Bioeng	10.1002/bit.27150	2019	*

References

#732	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2325

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69769

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92075.1 )

* These data were automatically processed and therefore are not curated

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Komagataeibacter xylinus strain DSM 2325

Komagataeibacter xylinus strain DSM 2325

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