Strain identifier
BacDive ID: 8585
Type strain: 
Species: Mycobacterium europaeum
Strain Designation: FI-95228
Culture col. no.: DSM 45397, CCUG 58464, JCM 19116
General
@ref: 16584
BacDive-ID: 8585
DSM-Number: 45397
keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic, human pathogen
description: Mycobacterium europaeum FI-95228 is a microaerophile, mesophilic human pathogen that was isolated from sputum from an Italian patient.
strain history: <- E. Tortoli, Careggi Hospital, Florence, Italy; FI-95228
doi: 10.13145/bacdive8585.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium europaeum
- full scientific name: Mycobacterium europaeum Tortoli et al. 2011
@ref: 16584
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium europaeum
full scientific name: Mycobacterium europaeum Tortoli et al. 2011 emend. Nouioui et al. 2018
strain designation: FI-95228
type strain: yes
Morphology
colony morphology
- @ref: 61694
- incubation period: 6 days
Culture and growth conditions
culture medium
- @ref: 16584
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
culture temp
- @ref: 16584
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 61694
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 16584 | sputum from an Italian patient | Italy | ITA | Europe |
| 61694 | Human sputum | Italy | ITA | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Sputum |
Safety information
risk assessment
- @ref: 16584
- pathogenicity human: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16584
- description: Mycobacterium europaeum strain DSM 45397 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence
- accession: HM022196
- length: 1796
- database: ena
- NCBI tax ID: 761804
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium europaeum CSUR P1344 | GCA_001373515 | contig | ncbi | 761804 |
| 66792 | Mycobacterium europaeum DSM 45397 | GCA_002102155 | contig | ncbi | 761804 |
| 66792 | Mycobacterium europaeum strain CSUR P1344 | 761804.3 | wgs | patric | 761804 |
| 66792 | Mycobacterium europaeum strain DSM 45397 | 761804.4 | wgs | patric | 761804 |
External links
@ref: 16584
culture collection no.: DSM 45397, CCUG 58464, JCM 19116
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/866489 |
| 20218 | http://www.straininfo.net/strains/866488 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16584 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45397) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45397 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 61694 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58464) | https://www.ccug.se/strain?id=58464 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |