Strain identifier

BacDive ID: 8585

Type strain: Yes

Species: Mycobacterium europaeum

Strain Designation: FI-95228

Culture col. no.: DSM 45397, CCUG 58464, JCM 19116

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16584

BacDive-ID: 8585

DSM-Number: 45397

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic, human pathogen

description: Mycobacterium europaeum FI-95228 is a microaerophile, mesophilic human pathogen that was isolated from sputum from an Italian patient.

strain history: <- E. Tortoli, Careggi Hospital, Florence, Italy; FI-95228

doi: 10.13145/bacdive8585.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium europaeum
  • full scientific name: Mycobacterium europaeum Tortoli et al. 2011

@ref: 16584

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium europaeum

full scientific name: Mycobacterium europaeum Tortoli et al. 2011 emend. Nouioui et al. 2018

strain designation: FI-95228

type strain: yes

Morphology

colony morphology

  • @ref: 61694
  • incubation period: 6 days

Culture and growth conditions

culture medium

  • @ref: 16584
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf

culture temp

  • @ref: 16584
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61694
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
16584sputum from an Italian patientItalyITAEurope
61694Human sputumItalyITAEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 16584
  • pathogenicity human: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16584
  • description: Mycobacterium europaeum strain DSM 45397 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence
  • accession: HM022196
  • length: 1796
  • database: ena
  • NCBI tax ID: 761804

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium europaeum CSUR P1344GCA_001373515contigncbi761804
66792Mycobacterium europaeum DSM 45397GCA_002102155contigncbi761804
66792Mycobacterium europaeum strain CSUR P1344761804.3wgspatric761804
66792Mycobacterium europaeum strain DSM 45397761804.4wgspatric761804

External links

@ref: 16584

culture collection no.: DSM 45397, CCUG 58464, JCM 19116

straininfo link

@refpassport
20218http://www.straininfo.net/strains/866489
20218http://www.straininfo.net/strains/866488

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16584Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45397)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45397
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
61694Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58464)https://www.ccug.se/strain?id=58464
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)