Mycobacterium europaeum (DSM 45397, CCUG 58464, JCM 19116)

Name: Mycobacterium europaeum (DSM 45397, CCUG 58464, JCM 19116)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8585

Type strain

Strain Designation FI-95228

Culture col. no. DSM 45397 CCUG 58464 JCM 19116 FI-95228

NCBI tax ID(s) 761804

Special Collections DSMZ CCUG JCM

History <- E. Tortoli, Careggi Hospital, Florence, Italy; FI-95228 CCUG 58464 <-- E. Tortoli FI-95228.

Links

Mycobacterium europaeum FI-95228 is a microaerophile, mesophilic prokaryote that was isolated from sputum from an Italian patient.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397542

CT2017-00317,JCM 19116,DSM 45397,CCUG 58464

@ref 20215

Last LPSN update 2026-02-09 11:19:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium europaeum

Full scientific name Mycobacterium europaeum Tortoli et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.046
125439	positive	97.5

Colony morphology

61694

Incubation period6 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16584	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16584	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61694	microaerophile
125439	obligate aerobe	99.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16584	sputum from an Italian patient		Italy	ITA	Europe
61694	Human sputum		Italy	ITA	Europe
67770	81-Year-old male suffering from cavitary pneumopathy	Florence	Italy	ITA	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
16584	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM210215v1 assembly for Mycobacterium europaeum DSM 45397	contig	GCA_002102155	761804.4	8111166772	761804	64.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
16584	Mycobacterium europaeum strain DSM 45397 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	HM022196	1796	761804
124043	Mycobacterium europaeum strain FI-09129 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence.	HM022197	1796	761804
124043	Mycobacterium europaeum strain FI-09129 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence.	HM022198	1795	761804

GC content

@ref	GC-content (mol%)	Method
67770	68.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium europaeum DSM 45397
NCBI: GCA_002102155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	53.60	no
125439	motility	BacteriaNetⓘ	no	79.40	no
125439	gram_stain	BacteriaNetⓘ	positive	97.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium europaeum strain DSM 45397
PATRIC: 761804.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.05	no
125438	anaerobic	anaerobicⓘ	no	90.56	yes
125438	aerobic	aerobicⓘ	yes	69.73	yes
125438	spore-forming	spore-formingⓘ	no	65.78	no
125438	thermophilic	thermophileⓘ	no	94.90	yes
125438	flagellated	motile2+ⓘ	no	88.44	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Pathogenicity	Respiratory tract isolation of Mycobacterium europaeum following influenza infection in an immunocompromised patient: a case report.	Phelippeau M, Delord M, Drancourt M, Brouqui P	J Med Case Rep	10.1186/1752-1947-8-463	2014
Phylogeny	Mycobacterium europaeum sp. nov., a scotochromogenic species related to the Mycobacterium simiae complex.	Tortoli E, Bottger EC, Fabio A, Falsen E, Gitti Z, Grottola A, Klenk HP, Mannino R, Mariottini A, Messino M, Pecorari M, Rumpianesi F	Int J Syst Evol Microbiol	10.1099/ijs.0.025601-0	2010

References

#16584	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45397
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61694	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58464
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium europaeum (DSM 45397, CCUG 58464, JCM 19116)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002102155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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