Strain identifier
BacDive ID: 8566
Type strain: 
Species: Mycobacterium sp.
Strain Designation: Lausanne 2413
Strain history: <- I. Tarnok, SN 286 <- R. Bönicke (Smooth) (Mycobacterium borstelense subsp. niacinogenes), Lausanne 2413
NCBI tax ID(s): 1785 (species)
version 8.1 (current version)
General
@ref: 11077
BacDive-ID: 8566
DSM-Number: 43487
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium sp. Lausanne 2413 is a mesophilic bacterium that was isolated from gastric lavage.
NCBI tax id
- NCBI tax id: 1785
- Matching level: species
strain history
- @ref: 11077
- history: <- I. Tarnok, SN 286 <- R. Bönicke (Smooth) (Mycobacterium borstelense subsp. niacinogenes), Lausanne 2413
doi: 10.13145/bacdive8566.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium sp.
- full scientific name: Mycobacterium Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycolicibacter 20215 Mycolicibacillus 20215 Mycolicibacterium 20215 Mycobacteroides
@ref: 11077
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium sp.
full scientific name: Mycobacterium sp.
strain designation: Lausanne 2413
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.718 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 11077
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 11077
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 94 |
| 69480 | no | 99.237 |
Isolation, sampling and environmental information
isolation
- @ref: 11077
- sample type: gastric lavage
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Gastrointestinal tract
- Cat3: #Stomach
taxonmaps
- @ref: 69479
- File name: preview.99_54.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_44;97_46;98_50;99_54&stattab=map
- Last taxonomy: Mycobacteroides
- 16S sequence: AY457082
- Sequence Identity:
- Total samples: 21994
- soil counts: 7046
- aquatic counts: 6199
- animal counts: 7007
- plant counts: 1742
Sequence information
16S sequences
- @ref: 20218
- description: Mycobacterium chelonae strain ATCC 19237 16S ribosomal RNA gene, partial sequence
- accession: AY457082
- length: 1481
- database: ena
- NCBI tax ID: 1774
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacteroides chelonae ATCC 19237 | GCA_001942555 | contig | ncbi | 1774 |
| 66792 | Mycobacterium chelonae strain ATCC 19237 | 1774.67 | wgs | patric | 1774 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 94 | no |
| motile | no | 95.955 | no |
| gram-positive | yes | 90.822 | no |
| anaerobic | no | 99.407 | no |
| aerobic | yes | 89.832 | no |
| halophile | no | 92.64 | no |
| spore-forming | no | 85.464 | no |
| thermophile | no | 99.554 | yes |
| glucose-util | yes | 80.375 | no |
| flagellated | no | 98.415 | no |
| glucose-ferment | no | 93.798 | no |
External links
@ref: 11077
culture collection no.: DSM 43487, ATCC 19237, IMET 10656, SN 286
straininfo link
- @ref: 77950
- straininfo: 36913
literature
- topic: Phylogeny
- Pubmed-ID: 30908517
- title: Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.
- authors: Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ Jr, Hasan NA, Reischl U, Sanchez S
- journal: PLoS One
- DOI: 10.1371/journal.pone.0214274
- year: 2019
- mesh: Animals, Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, Biofilms, Humans, Microbial Sensitivity Tests, Mycobacterium abscessus/*classification/drug effects/isolation & purification, Phylogeny, Polymorphism, Single Nucleotide, RNA, Ribosomal, 16S/genetics, Species Specificity, Whole Genome Sequencing/*methods
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11077 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43487) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43487 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77950 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36913.1 | StrainInfo: A central database for resolving microbial strain identifiers |