Strain identifier
BacDive ID: 8537
Type strain: 
Species: Mycobacterium seoulense
Strain Designation: 03-19
Strain history: CIP <- 2007, DSMZ <- H. S. Mun, Seoul Univ., Seoul, Korea: strain 03-19
NCBI tax ID(s): 386911 (species)
version 8.1 (current version)
General
@ref: 12230
BacDive-ID: 8537
DSM-Number: 44998
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, rod-shaped, human pathogen
description: Mycobacterium seoulense 03-19 is an aerobe, mesophilic, rod-shaped human pathogen that was isolated from sputum.
NCBI tax id
- NCBI tax id: 386911
- Matching level: species
strain history
| @ref | history |
|---|---|
| 12230 | <- H.-S. Mun; 03-19 |
| 67770 | KCTC 19146 <-- B.-J. Kim 03-19. |
| 67771 | <- BJ Kim, Seoul Natl. Univ. |
| 122562 | CIP <- 2007, DSMZ <- H. S. Mun, Seoul Univ., Seoul, Korea: strain 03-19 |
doi: 10.13145/bacdive8537.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium seoulense
- full scientific name: Mycobacterium seoulense Mun et al. 2007
@ref: 12230
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium seoulense
full scientific name: Mycobacterium seoulense Mun et al. 2007
strain designation: 03-19
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | motility | confidence |
|---|---|---|---|---|
| 31977 | rod-shaped | |||
| 67771 | positive | |||
| 69480 | no | 92.025 | ||
| 69480 | positive | 100 |
pigmentation
- @ref: 31977
- production: yes
multimedia
- @ref: 12230
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44998.jpg
- caption: Medium 645 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12230 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 122562 | CIP Medium 55 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 12230 | positive | growth | 37 | mesophilic |
| 31977 | positive | growth | 25-37 | mesophilic |
| 31977 | positive | optimum | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 31977 | no | |
| 69481 | no | 99 |
| 69480 | no | 99.932 |
metabolite utilization
- @ref: 31977
- Chebi-ID: 17632
- metabolite: nitrate
- utilization activity: +
- kind of utilization tested: reduction
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31977 | catalase | + | 1.11.1.6 |
| 31977 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 12230 | sputum | Seoul | Republic of Korea | KOR | Asia |
| 67770 | Sputum of a 52-year-old female with symptomatic pulmonary infection | Seoul | Republic of Korea | KOR | Asia |
| 67771 | From sputum | Republic of Korea | KOR | Asia | |
| 122562 | Human, Lung | Seoul | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Fluids
- Cat3: #Sputum
taxonmaps
- @ref: 69479
- File name: preview.99_75.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_75&stattab=map
- Last taxonomy: Mycobacterium
- 16S sequence: DQ536403
- Sequence Identity:
- Total samples: 1520
- soil counts: 881
- aquatic counts: 382
- animal counts: 203
- plant counts: 54
Safety information
risk assessment
| @ref | pathogenicity human | biosafety level | biosafety level comment |
|---|---|---|---|
| 12230 | yes, in single cases | 1 | Risk group (German classification) |
| 122562 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycobacterium seoulense strain 03-19 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | FJ042511 | 438 | ena | 386911 |
| 20218 | Mycobacterium seoulense strain DSM 44998 16S ribosomal RNA gene, partial sequence | EU191909 | 468 | ena | 386911 |
| 31977 | Mycobacterium seoulense strain 03-19 16S ribosomal RNA gene, partial sequence | DQ536403 | 1522 | nuccore | 386911 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium seoulense JCM 16018 | GCA_010731595 | complete | ncbi | 386911 |
| 66792 | Mycobacterium seoulense strain JCM 16018 | 386911.11 | complete | patric | 386911 |
| 66792 | Mycobacterium seoulense DSM 44998 | GCA_025823355 | scaffold | ncbi | 386911 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| motile | no | 92.96 | no |
| flagellated | no | 98.683 | no |
| gram-positive | yes | 87.797 | yes |
| anaerobic | no | 98.667 | yes |
| aerobic | yes | 87.614 | yes |
| halophile | no | 93.093 | no |
| spore-forming | no | 88.494 | yes |
| glucose-util | yes | 64.732 | no |
| thermophile | no | 97.909 | yes |
| glucose-ferment | no | 91.87 | no |
External links
@ref: 12230
culture collection no.: DSM 44998, CIP 109583, KCTC 19146, JCM 16018
straininfo link
- @ref: 77923
- straininfo: 297263
literature
- topic: Phylogeny
- Pubmed-ID: 17329791
- title: Mycobacterium seoulense sp. nov., a slowly growing scotochromogenic species.
- authors: Mun HS, Kim HJ, Oh EJ, Kim H, Bai GH, Yu HK, Park YG, Cha CY, Kook YH, Kim BJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64744-0
- year: 2007
- mesh: Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Female, Humans, Lung Diseases/*microbiology, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics, Mycobacterium Infections/*microbiology, RNA, Ribosomal, 16S/genetics
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 12230 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44998) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44998 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 31977 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28232 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
| 77923 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297263.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
| 122562 | Curators of the CIP | Collection of Institut Pasteur (CIP 109583) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109583 |