Strain identifier
BacDive ID: 8532
Type strain: 
Species: Mycobacterium yunnanensis
Strain history: <- W.-J. Li, YIM
NCBI tax ID(s): 368477 (species)
version 8.1 (current version)
General
@ref: 12019
BacDive-ID: 8532
DSM-Number: 44838
keywords: genome sequence, 16S sequence, mesophilic
description: Mycobacterium yunnanensis DSM 44838 is a mesophilic Actinobacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 368477
- Matching level: species
strain history
- @ref: 12019
- history: <- W.-J. Li, YIM
doi: 10.13145/bacdive8532.20230509.8.1
Name and taxonomic classification
@ref: 12019
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium yunnanensis
full scientific name: Mycobacterium yunnanensis Li et al.
type strain: yes
Culture and growth conditions
culture medium
- @ref: 12019
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 12019
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 12019
- sample type: forest soil
- geographic location: Yunnan Province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Sequence information
16S sequences
- @ref: 20218
- description: Mycobacterium yunnanensis strain DSM 44838 16S ribosomal RNA gene, partial sequence
- accession: DQ350153
- length: 505
- database: ena
- NCBI tax ID: 368477
Genome sequences
- @ref: 66792
- description: Mycobacterium yunnanensis DSM 44838
- accession: GCA_025823185
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 368477
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.68 | no |
| flagellated | no | 98.283 | no |
| gram-positive | yes | 90.144 | no |
| anaerobic | no | 99.412 | no |
| aerobic | yes | 92.519 | no |
| halophile | no | 94.502 | no |
| spore-forming | no | 87.482 | no |
| glucose-ferment | no | 91.332 | no |
| thermophile | no | 99.442 | no |
| glucose-util | yes | 88.896 | no |
External links
@ref: 12019
culture collection no.: DSM 44838, KCTC 19022, YIM 70063
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12019 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44838) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44838 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |