Strain identifier

BacDive ID: 8529

Type strain: Yes

Species: Mycobacterium canariasense

Strain Designation: 502329

Strain history: CIP <- 2003, M.S. Jiménez, Madrid, Spain: strain 502329

NCBI tax ID(s): 228230 (species)

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General

@ref: 12010

BacDive-ID: 8529

DSM-Number: 44828

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, rod-shaped

description: Mycobacterium canariasense 502329 is a microaerophile, mesophilic, rod-shaped bacterium that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 228230
  • Matching level: species

strain history

@refhistory
12010<- CIP <- M.S. Jiménez, Madrid; 502329
382512003, M.S. Jiménez, Madrid, Spain: strain 502329
67770CCUG 47953 <-- CIP 107998 <-- M. Soledad Jiménez 502329.
117129CIP <- 2003, M.S. Jiménez, Madrid, Spain: strain 502329

doi: 10.13145/bacdive8529.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium canariasense
  • full scientific name: Mycobacterium canariasense Jiménez et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium canariasense

@ref: 12010

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium canariasense

full scientific name: Mycobacterium canariasense Jiménez et al. 2004

strain designation: 502329

type strain: yes

Morphology

cell morphology

@refcell shapegram stainconfidencemotility
30150rod-shaped
69480positive100
117129rod-shapedno

colony morphology

  • @ref: 57934
  • incubation period: 2-3 days

pigmentation

  • @ref: 30150
  • production: no

multimedia

  • @ref: 12010
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44828.jpg
  • caption: Medium 645 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12010MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
38251MEDIUM 55 - for Mycobacteriumyes
117129CIP Medium 55yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=55

culture temp

@refgrowthtypetemperaturerange
12010positivegrowth37mesophilic
30150positivegrowth30-37mesophilic
38251positivegrowth30mesophilic
57934positivegrowth30-37mesophilic
67770positivegrowth37mesophilic
117129positivegrowth22-30
117129nogrowth10psychrophilic
117129nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57934microaerophile
117129obligate aerobe

spore formation

@refspore formationconfidence
69481no90
69480no99.664

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3015022599arabinose+carbon source
3015029864mannitol+carbon source
3015018222xylose+carbon source
117129606565hippurate-hydrolysis
11712917632nitrate-reduction
11712916301nitrite-reduction
11712917632nitrate-respiration
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 117129
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
30150arylsulfatase+3.1.6.1
30150catalase+1.11.1.6
68379catalase-1.11.1.6
68379gelatinase-
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
117129oxidase-
117129beta-galactosidase-3.2.1.23
117129gelatinase-
117129amylase-
117129DNase-
117129caseinase-3.4.21.50
117129catalase+1.11.1.6
117129tween esterase+
117129gamma-glutamyltransferase+2.3.2.2
117129lecithinase-
117129lipase-
117129protease-
117129urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
57934---+--+-++-----------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
57934-+++-++-+-++---++---
117129-+++++----++---++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117129++------------------++-+--------++---------++----+-+---+----+-+-+-----+-+------++---+-+-+------++--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
12010human bloodSpainESPEurope
57934Human bloodSpainESPEurope2002-01-01Las Palmas,Hospital Dr. Negrin
67770Blood of a patient with febrile syndromeSpainESPEuropeCanary Islands
117129Human, BloodSpainESPEurope2002

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
120102Risk group (German classification)
1171291Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium canariasense strain CIP 107998 16S ribosomal RNA gene, partial sequenceAY943207513ena228230
30150Mycobacterium canariasense 16S ribosomal RNA gene, partial sequenceAY2554781433nuccore228230

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium canariasense strain CCUG 47953228230.4wgspatric228230
66792Mycobacterium canariasense strain JCM15298228230.3wgspatric228230
67770Mycolicibacterium canariasense JCM15298GCA_001570445scaffoldncbi228230
67770Mycolicibacterium canariasense CCUG 47953GCA_002101555contigncbi228230
66792Mycolicibacterium canariasense DSM 44828GCA_025822345scaffoldncbi228230

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno90no
motileno94.232no
gram-positiveyes89.582no
anaerobicno99.573yes
aerobicyes88.697yes
halophileno94.508no
spore-formingno86.868no
glucose-utilyes89.075no
flagellatedno97.559no
thermophileno99.533yes
glucose-fermentno89.175yes

External links

@ref: 12010

culture collection no.: JCM 15298, DSM 44828, CCUG 47953, CIP 107998

straininfo link

  • @ref: 77917
  • straininfo: 134299

literature

  • topic: Phylogeny
  • Pubmed-ID: 15388736
  • title: Mycobacterium canariasense sp. nov.
  • authors: Jimenez MS, Campos-Herrero MI, Garcia D, Luquin M, Herrera L, Garcia MJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02999-0
  • year: 2004
  • mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Blood/microbiology, Cell Wall/chemistry, Chaperonin 60, Chaperonins/genetics, Culture Media, DNA Fingerprinting, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Humans, Molecular Sequence Data, Mycobacterium/*classification/*isolation & purification/physiology, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Temperature
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
12010Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44828)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44828
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
30150Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126501
38251Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5570
57934Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47953)https://www.ccug.se/strain?id=47953
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77917Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134299.1StrainInfo: A central database for resolving microbial strain identifiers
117129Curators of the CIPCollection of Institut Pasteur (CIP 107998)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107998