Strain identifier

BacDive ID: 8498

Type strain: Yes

Species: Mycobacterium botniense

Strain Designation: E 347

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11843

BacDive-ID: 8498

DSM-Number: 44537

keywords: aerobe, Bacteria, 16S sequence, genome sequence, thermophilic

description: Mycobacterium botniense E 347 is an aerobe, thermophilic bacterium that was isolated from brook water.

strain history: <- E. Tortoli, Coreggi Hospital, Florence; E 347

doi: 10.13145/bacdive8498.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium botniense
  • full scientific name: Mycobacterium botniense Torkko et al. 2000

@ref: 11843

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium botniense

full scientific name: Mycobacterium botniense Torkko et al. 2000

strain designation: E 347

type strain: yes

Morphology

colony morphology

  • @ref: 57938
  • incubation period: >21 days

multimedia

  • @ref: 11843
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44537.jpg
  • caption: Medium 645 45°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlink
11843MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
11843MIDDLEBROCK 7H11 AGAR (DSMZ Medium 911)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium911.pdf

culture temp

@refgrowthtypetemperaturerange
11843positivegrowth45thermophilic
57938positivegrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57938
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11843brook waterBotniaFinlandFINEurope
57938Brook waterBotniaFinlandFINEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 11843
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Mycobacterium botniense strain DSM 44537 16S ribosomal RNA gene, partial sequenceAF547902558ena84962
20218Mycobacterium botniense 16S rRNA gene and internal transcribed spacer 1AJ0127561787ena84962

Genome sequences

  • @ref: 66792
  • description: Mycobacterium botniense JCM 17322
  • accession: GCA_010723305
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 84962

External links

@ref: 11843

culture collection no.: DSM 44537, ATCC 700701, CCUG 47450, CCUG 47976, JCM 17322

straininfo link

@refpassport
20218http://www.straininfo.net/strains/169792
20218http://www.straininfo.net/strains/118364
20218http://www.straininfo.net/strains/331923

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11843Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44537)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44537
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
57938Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47976)https://www.ccug.se/strain?id=47976
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)