Name: Mycobacterium botniense E 347
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8498

Type strain:

Species: Mycobacterium botniense

Strain Designation: E 347

Culture col. no.: DSM 44537, ATCC 700701, CCUG 47450, CCUG 47976, JCM 17322, CIP 106753, NCIMB 13713

Strain history: CCUG 47976 <-- P. Torkko <-- E. Tortoli E347.

NCBI tax ID(s): 84962 (species)

SI-ID 44091

ATCC 700701, ATCC 700702, DSM 44536, DSM 44537, CCUG47450, NCIMB 13713, CCUG 47976, CIP 106753, JCM 17322

Other strains from Mycobacterium botniense

M. botniense E 43, DSM 44536, ATCC 700702

Section

Mycobacterium botniense E 347 is an aerobe, thermophilic bacterium that was isolated from brook water.

aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium botniense**
	Full Scientific Name (LPSN)	Mycobacterium botniense Torkko et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.382

[Ref.: #57938]

Incubation period

>21 days

Multimedia content

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Caption:

Medium 645 45°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MIDDLEBROCK 7H11 AGAR (DSMZ Medium 911)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #11843]	growth	45 °C
[Ref.: #57938]	growth	45 °C
[Ref.: #67770]	growth	45 °C

[Ref.: #11843]	Temperature range	thermophilic
[Ref.: #57938]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

no Confidence in %99.777

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11843]	Sample type/isolated from	brook water
[Ref.: #11843]	Geographic location (country and/or sea, region)	Botnia
[Ref.: #11843]	Country	Finland
[Ref.: #11843]	Country ISO 3 Code	FIN
[Ref.: #11843]	Continent	Europe

[Ref.: #57938]	Sample type/isolated from	Brook water
[Ref.: #57938]	Geographic location (country and/or sea, region)	Botnia
[Ref.: #57938]	Country	Finland
[Ref.: #57938]	Country ISO 3 Code	FIN
[Ref.: #57938]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Stream water
[Ref.: #67770]	Country	Finland
[Ref.: #67770]	Country ISO 3 Code	FIN
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium botniense strain DSM 44537 16S ribosomal RNA gene, partial sequence	AF547902	558	ENA	84962 tax ID	*
[Ref.: #20218]	Mycobacterium botniense 16S rRNA gene and internal transcribed spacer 1	AJ012756	1787	ENA	84962 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium botniense JCM 17322	GCA_010723305	contig	GenBank	84962 tax ID	*
[Ref.: #66792]	Mycobacterium botniense strain JCM 17322	84962.6	wgs	PATRIC	84962 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium botniense strain JCM 17322 PATRIC: 84962.6
[Ref.: #69481]	spore-forming	no	73	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium botniense strain JCM 17322 PATRIC: 84962.6
[Ref.: #69480]	motile	no	97.081	no
[Ref.: #69480]	flagellated	no	99.202	no
[Ref.: #69480]	gram-positive	yes	89.143	no
[Ref.: #69480]	anaerobic	no	98.318	yes
[Ref.: #69480]	halophile	no	88.771	no
[Ref.: #69480]	spore-forming	no	87.829	no
[Ref.: #69480]	glucose-util	yes	67.464	no
[Ref.: #69480]	aerobic	yes	87.629	yes
[Ref.: #69480]	thermophile	yes	59.832	yes
[Ref.: #69480]	glucose-ferment	no	91.306	no

Availability in culture collections External links

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Culture collection no.

DSM 44537, ATCC 700701, CCUG 47450, CCUG 47976, JCM 17322, CIP 106753, NCIMB 13713

[Ref.: #77891]

SI-ID 44091

References

#11843

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44537

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#57938 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47976

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77891

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44091.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium botniense strain JCM 17322

Mycobacterium botniense strain JCM 17322

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