Strain identifier
BacDive ID: 83
Type strain: 
Species: Komagataeibacter europaeus
Strain Designation: 21
Strain history: DSM 6160 <-- M. Sievers DES 11.
NCBI tax ID(s): 940283 (strain), 33995 (species)
version 9.1 (current version)
General
@ref: 2455
BacDive-ID: 83
DSM-Number: 6160
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Komagataeibacter europaeus 21 is a Gram-negative bacterium that was isolated from Submerged culture vinegar generator at a factory in Esslingen in the southern part of Germany.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 940283 | strain |
| 33995 | species |
strain history
| @ref | history |
|---|---|
| 2455 | <- M. Sievers, BA f. Milchforsch., strain 21 |
| 67770 | DSM 6160 <-- M. Sievers DES 11. |
doi: 10.13145/bacdive83.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Komagataeibacter
- species: Komagataeibacter europaeus
- full scientific name: Komagataeibacter europaeus (Sievers et al. 1992) Yamada et al. 2013
synonyms
@ref synonym 20215 Komagatabacter europaeus 20215 Gluconoacetobacter europaeus 20215 Acetobacter europaeus 20215 Gluconacetobacter europaeus
@ref: 2455
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter europaeus
full scientific name: Komagataeibacter europaeus (Sievers et al. 1992) Yamada et al. 2013
strain designation: 21
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 95.833
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2455 | ACETOBACTER EUROPAEUS MEDIUM (DSMZ Medium 631) | yes | https://mediadive.dsmz.de/medium/631 | Name: ACETOBACTER EUROPAEUS MEDIUM (DSMZ Medium 631) Composition: Glucose 5.0 g/l Peptone 3.0 g/l Yeast extract 2.0 g/l Acetic acid Ethanol Distilled water |
| 2455 | SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429) | yes | https://mediadive.dsmz.de/medium/1429 | Name: SABOURAUD GLUCOSE MEDIUM (DSMZ Medium 1429) Composition: SABOURAUD- Glucose-Bouillon 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 2455 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.077
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Submerged culture vinegar generator at a factory in Esslingen in the southern part of Germany
taxonmaps
- @ref: 69479
- File name: preview.99_79.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_79&stattab=map
- Last taxonomy: Komagataeibacter
- 16S sequence: Z21936
- Sequence Identity:
- Total samples: 4067
- soil counts: 662
- aquatic counts: 523
- animal counts: 2327
- plant counts: 555
Safety information
risk assessment
- @ref: 2455
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Gluconacetobacter europaeus gene for 16S rRNA, partial sequence, strain: DSM 6160 | AB205220 | 1446 | nuccore | 940283 |
| 20218 | Gluconacetobacter europaeus gene for 16S rRNA, partial sequence, strain: JCM 16935 | AB645729 | 1411 | nuccore | 33995 |
| 20218 | A.europaeus DNA for 16S-23S spacer region | X85406 | 863 | nuccore | 940283 |
| 2455 | A.europaeus 16S rRNA gene | Z21936 | 1482 | nuccore | 940283 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gluconacetobacter europaeus LMG 18890 | 940283.3 | wgs | patric | 940283 |
| 66792 | Komagataeibacter europaeus LMG 18890 | 2547132370 | draft | img | 940283 |
| 67770 | Komagataeibacter europaeus LMG 18890 type strain:LMG 18890 | GCA_000285295 | scaffold | ncbi | 940283 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.833 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.553 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.466 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.077 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.774 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 58.079 | no |
External links
@ref: 2455
culture collection no.: DSM 6160, ATCC 51845, BCC 36446, JCM 16935, BCRC 17053, LMG 18724, LMG 18890
straininfo link
- @ref: 69766
- straininfo: 12448
literature
- topic: Genetics
- Pubmed-ID: 21441523
- title: Genome sequences of the high-acetic acid-resistant bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (reference strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (isolated from vinegar).
- authors: Andres-Barrao C, Falquet L, Calderon-Copete SP, Descombes P, Ortega Perez R, Barja F
- journal: J Bacteriol
- DOI: 10.1128/JB.00229-11
- year: 2011
- mesh: Acetic Acid, DNA, Bacterial/*chemistry/*genetics, Food Microbiology, *Genome, Bacterial, Gluconacetobacter/*genetics/isolation & purification, Industrial Microbiology, Molecular Sequence Data, Sequence Analysis, DNA
- topic2: Biotechnology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2455 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6160) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6160 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69766 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12448.1 | StrainInfo: A central database for resolving microbial strain identifiers |