Strain identifier

BacDive ID: 83

Type strain: Yes

Species: Komagataeibacter europaeus

Strain Designation: 21

Strain history: DSM 6160 <-- M. Sievers DES 11.

NCBI tax ID(s): 940283 (strain), 33995 (species)

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General

@ref: 2455

BacDive-ID: 83

DSM-Number: 6160

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Komagataeibacter europaeus 21 is a mesophilic bacterium that was isolated from Submerged culture vinegar generator at a factory in Esslingen in the southern part of Germany.

NCBI tax id

NCBI tax idMatching level
940283strain
33995species

strain history

@refhistory
2455<- M. Sievers, BA f. Milchforsch., strain 21
67770DSM 6160 <-- M. Sievers DES 11.

doi: 10.13145/bacdive83.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter europaeus
  • full scientific name: Komagataeibacter europaeus (Sievers et al. 1992) Yamada et al. 2013
  • synonyms

    @refsynonym
    20215Komagatabacter europaeus
    20215Gluconoacetobacter europaeus
    20215Acetobacter europaeus
    20215Gluconacetobacter europaeus

@ref: 2455

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter europaeus

full scientific name: Komagataeibacter europaeus (Sievers et al. 1992) Yamada et al. 2013

strain designation: 21

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2455ACETOBACTER EUROPAEUS MEDIUM (DSMZ Medium 631)yeshttps://mediadive.dsmz.de/medium/631Name: ACETOBACTER EUROPAEUS MEDIUM (DSMZ Medium 631) Composition: Glucose 5.0 g/l Peptone 3.0 g/l Yeast extract 2.0 g/l Acetic acid Ethanol Distilled water
2455SABOURAND GLUCOSE MEDIUM (DSMZ Medium 1429)yeshttps://mediadive.dsmz.de/medium/1429Name: SABOURAUD GLUCOSE MEDIUM (DSMZ Medium 1429) Composition: SABOURAUD- Glucose-Bouillon 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
2455positivegrowth28mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Submerged culture vinegar generator at a factory in Esslingen in the southern part of Germany

taxonmaps

  • @ref: 69479
  • File name: preview.99_79.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_64;97_67;98_72;99_79&stattab=map
  • Last taxonomy: Komagataeibacter
  • 16S sequence: Z21936
  • Sequence Identity:
  • Total samples: 4067
  • soil counts: 662
  • aquatic counts: 523
  • animal counts: 2327
  • plant counts: 555

Safety information

risk assessment

  • @ref: 2455
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Gluconacetobacter europaeus gene for 16S rRNA, partial sequence, strain: DSM 6160AB2052201446ena940283
20218Gluconacetobacter europaeus gene for 16S rRNA, partial sequence, strain: JCM 16935AB6457291411ena33995
20218A.europaeus DNA for 16S-23S spacer regionX85406863ena940283
2455A.europaeus 16S rRNA geneZ219361482ena940283

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Gluconacetobacter europaeus LMG 18890940283.3wgspatric940283
66792Komagataeibacter europaeus LMG 188902547132370draftimg940283
67770Komagataeibacter europaeus LMG 18890 type strain:LMG 18890GCA_000285295scaffoldncbi940283

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno80.923no
flagellatedno97.183no
gram-positiveno96.088no
anaerobicno97.464no
halophileno93.676no
spore-formingno95.877no
glucose-utilyes88.828no
aerobicyes83.377no
thermophileno97.931yes
glucose-fermentno87.103no

External links

@ref: 2455

culture collection no.: DSM 6160, ATCC 51845, BCC 36446, JCM 16935, BCRC 17053, LMG 18724, LMG 18890

straininfo link

  • @ref: 69766
  • straininfo: 12448

literature

  • topic: Genetics
  • Pubmed-ID: 21441523
  • title: Genome sequences of the high-acetic acid-resistant bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (reference strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (isolated from vinegar).
  • authors: Andres-Barrao C, Falquet L, Calderon-Copete SP, Descombes P, Ortega Perez R, Barja F
  • journal: J Bacteriol
  • DOI: 10.1128/JB.00229-11
  • year: 2011
  • mesh: Acetic Acid, DNA, Bacterial/*chemistry/*genetics, Food Microbiology, *Genome, Bacterial, Gluconacetobacter/*genetics/isolation & purification, Industrial Microbiology, Molecular Sequence Data, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2455Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6160)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6160
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69766Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12448.1StrainInfo: A central database for resolving microbial strain identifiers