Strain identifier
BacDive ID: 828
Type strain: 
Species: Bacillus sp.
Strain Designation: M-5
Strain history: IAM 12319 <-- O. Nakayama M-5.
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 210
BacDive-ID: 828
DSM-Number: 445
keywords: 16S sequence, Bacteria, mesophilic, lactate production
description: Bacillus sp. M-5 is a mesophilic bacterium that produces lactate and was isolated from rhizosphere of wood sorrel.
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
| @ref | history |
|---|---|
| 210 | <- O. Nakayama, M-5 (Bacillus laevolacticus) |
| 67770 | IAM 12319 <-- O. Nakayama M-5. |
doi: 10.13145/bacdive828.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 210
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: M-5
type strain: no
Culture and growth conditions
culture medium
- @ref: 210
- name: BACILLUS "RACEMILACTICUS" MEDIUM (DSMZ Medium 8)
- growth: yes
- link: https://mediadive.dsmz.de/medium/8
- composition: Name: BACILLUS "RACEMILACTICUS" MEDIUM (DSMZ Medium 8) Composition: Agar 15.0 g/l CaCO3 5.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Glucose 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 210 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
compound production
- @ref: 210
- compound: DL lactic acid
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species |
|---|---|---|
| 210 | rhizosphere of wood sorrel | |
| 67770 | Rhizosphere of wood sorrel (Rumex acetosa) | Rumex acetosa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_32949.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_15912;97_19506;98_24370;99_32949&stattab=map
- Last taxonomy: Terrilactibacillus laevilacticus subclade
- 16S sequence: D16279
- Sequence Identity:
- Total samples: 1144
- soil counts: 337
- aquatic counts: 185
- animal counts: 559
- plant counts: 63
Sequence information
16S sequences
- @ref: 67770
- description: Bacillus racemilacticus gene for 16S rRNA, partial sequence, strain: IAM 12319
- accession: D16279
- length: 1492
- database: ena
- NCBI tax ID: 33022
GC content
- @ref: 67770
- GC-content: 37
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 210
culture collection no.: DSM 445, JCM 2518, ATCC 23497, BCRC 12807, DSM 2309, IAM 12319, NCIMB 10275
straininfo link
- @ref: 70502
- straininfo: 265547
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 210 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 445) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-445 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 70502 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265547.1 | StrainInfo: A central database for resolving microbial strain identifiers |