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Strain identifier

BacDive ID: 828

Type strain: No

Species: Bacillus sp.

Strain Designation: M-5

Strain history: IAM 12319 <-- O. Nakayama M-5.

NCBI tax ID(s): 1409 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 210

BacDive-ID: 828

DSM-Number: 445

keywords: 16S sequence, Bacteria, mesophilic, lactate production

description: Bacillus sp. M-5 is a mesophilic bacterium that produces lactate and was isolated from rhizosphere of wood sorrel.

NCBI tax id

  • NCBI tax id: 1409
  • Matching level: species

strain history

doi: 10.13145/bacdive828.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus sp.
  • full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Quasibacillus
    20215Pseudobacillus
    20215Maribacillus

@ref: 210

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Bacillus

species: Bacillus sp.

full scientific name: Bacillus sp.

strain designation: M-5

type strain: no

Culture and growth conditions

culture medium

  • @ref: 210
  • name: BACILLUS "RACEMILACTICUS" MEDIUM (DSMZ Medium 8)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/8
  • composition: Name: BACILLUS "RACEMILACTICUS" MEDIUM (DSMZ Medium 8) Composition: Agar 15.0 g/l CaCO3 5.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Glucose 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
210positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

compound production

  • @ref: 210
  • compound: DL lactic acid

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typehost species
210rhizosphere of wood sorrel
67770Rhizosphere of wood sorrel (Rumex acetosa)Rumex acetosa

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_32949.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_15912;97_19506;98_24370;99_32949&stattab=map
  • Last taxonomy: Terrilactibacillus laevilacticus subclade
  • 16S sequence: D16279
  • Sequence Identity:
  • Total samples: 1144
  • soil counts: 337
  • aquatic counts: 185
  • animal counts: 559
  • plant counts: 63

Sequence information

16S sequences

  • @ref: 67770
  • description: Bacillus racemilacticus gene for 16S rRNA, partial sequence, strain: IAM 12319
  • accession: D16279
  • length: 1492
  • database: ena
  • NCBI tax ID: 33022

GC content

  • @ref: 67770
  • GC-content: 37
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 210

culture collection no.: DSM 445, JCM 2518, ATCC 23497, BCRC 12807, DSM 2309, IAM 12319, NCIMB 10275

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/156696

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
210Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 445)https://www.dsmz.de/collection/catalogue/details/culture/DSM-445
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta