Strain identifier
BacDive ID: 8144
Type strain:
Species: Acinetobacter venetianus
Strain Designation: RAG-1, Vaneechoutte ACI 403
Strain history: CIP <- 2009, M. Vaneechoutte, Ghent Univ. Hosp., Ghent, Belgium: strain RAG-1
NCBI tax ID(s): 1191460 (strain), 52133 (species)
General
@ref: 16671
BacDive-ID: 8144
DSM-Number: 23050
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped
description: Acinetobacter venetianus RAG-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1191460 | strain |
52133 | species |
strain history
@ref | history |
---|---|
16671 | <- CCUG; RAG-1 <- L. Dijkshoorn, Leiden Univ. Medical Center, Netherlands; LUH 3904 <- M. Vaneechoutte; ACI 403 <- E. Robinson, Baltimore, USA |
123813 | CIP <- 2009, M. Vaneechoutte, Ghent Univ. Hosp., Ghent, Belgium: strain RAG-1 |
doi: 10.13145/bacdive8144.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter venetianus
- full scientific name: Acinetobacter venetianus (ex Di Cello et al. 1997) Vaneechoutte et al. 2009
synonyms
- @ref: 20215
- synonym: Acinetobacter venetianus
@ref: 16671
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter venetianus
full scientific name: Acinetobacter venetianus (ex Di Cello et al. 1997) Vaneechoutte et al. 2009
strain designation: RAG-1, Vaneechoutte ACI 403
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility |
---|---|---|---|
29005 | negative | ovoid-shaped | no |
123813 | negative | oval-shaped | no |
colony morphology
- @ref: 16671
- type of hemolysis: alpha/beta
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16671 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
16671 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
42138 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
123813 | CIP Medium 328 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328 | |
123813 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16671 | positive | growth | 28 | mesophilic |
29005 | positive | growth | 30-37 | mesophilic |
29005 | positive | optimum | 33.5 | mesophilic |
42138 | positive | growth | 30 | mesophilic |
56822 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29005 | aerobe |
123813 | obligate aerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29005 | 30089 | acetate | + | carbon source |
29005 | 29016 | arginine | + | carbon source |
29005 | 16947 | citrate | + | carbon source |
29005 | 16236 | ethanol | + | carbon source |
29005 | 27570 | histidine | + | carbon source |
29005 | 25017 | leucine | + | carbon source |
29005 | 25115 | malate | + | carbon source |
29005 | 15792 | malonate | + | carbon source |
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
123813 | 17632 | nitrate | + | reduction |
123813 | 16301 | nitrite | - | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
123813 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
16671 | catalase | + | 1.11.1.6 |
16671 | cytochrome-c oxidase | - | 1.9.3.1 |
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
123813 | oxidase | - | |
123813 | catalase | + | 1.11.1.6 |
123813 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123813 | - | - | + | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16671 | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | + | - | + | + | - | - |
16671 | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | + | - | + | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16671 | seawater | Tel Baruch | Israel | ISR | Asia |
56822 | Tar on beach | Israelian beach (Tel Baruch) | |||
123813 | Environment, Sea water, beach | Tel Baruch | Israel | ISR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
16671 | 1 | Risk group (German classification) |
123813 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter sp. ATCC 31012 16S ribosomal RNA gene, partial sequence | AF542963 | 1456 | ena | 1191460 |
20218 | Acinetobacter venetianus strain CCUG 45561 16S-23S ribosomal RNA intergenic spacer, complete sequence | AY601846 | 612 | ena | 52133 |
29005 | Acinetobacter venetianus partial 16S rRNA gene, strain ACI555 | AM909651 | 1410 | nuccore | 52133 |
16671 | Acinetobacter venetianus 16S rRNA gene, strain ATCC 31012 | AJ295007 | 1463 | ena | 1191460 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter venetianus RAG-1 | 2565956684 | draft | img | 1191460 |
66792 | Acinetobacter venetianus RAG-1 | 2551306081 | draft | img | 1191460 |
GC content
- @ref: 16671
- GC-content: 43.9
External links
@ref: 16671
culture collection no.: KCTC 2702, BCRC 14357, DSM 23050, ATCC 31012, CCUG 45561, LMG 19082, LUH 3904, NIPH 1925, CIP 110063
straininfo link
- @ref: 77548
- straininfo: 46716
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10096135 | Oil-degrading Acinetobacter strain RAG-1 and strains described as 'Acinetobacter venetianus sp. nov.' belong to the same genomic species. | Vaneechoutte M, Tjernberg I, Baldi F, Pepi M, Fani R, Sullivan ER, van der Toorn J, Dijkshoorn L | Res Microbiol | 10.1016/s0923-2508(99)80047-3 | 1999 | Acinetobacter/*classification/genetics/metabolism, DNA, Bacterial/analysis, Industrial Microbiology, Marine Biology, Nucleic Acid Hybridization, Oils/metabolism | Metabolism |
10223998 | Adhesion of acinetobacter venetianus to diesel fuel droplets studied with In situ electrochemical and molecular probes | Baldi F, Ivosevic N, Minacci A, Pepi M, Fani R, Svetlicic V V, utic V V | Appl Environ Microbiol | 10.1128/AEM.65.5.2041-2048.1999 | 1999 | |||
Enzymology | 12732528 | An exocellular protein from the oil-degrading microbe Acinetobacter venetianus RAG-1 enhances the emulsifying activity of the polymeric bioemulsifier emulsan. | Bach H, Berdichevsky Y, Gutnick D | Appl Environ Microbiol | 10.1128/AEM.69.5.2608-2615.2003 | 2003 | Acinetobacter/genetics/*metabolism, Bacterial Proteins/genetics/*isolation & purification/*pharmacology, Base Sequence, Biodegradation, Environmental, DNA, Bacterial/genetics, Esterases/genetics/*isolation & purification/*pharmacology, Excipients/chemistry/*isolation & purification/*pharmacology, Fuel Oils, Molecular Weight, Mutagenesis, Site-Directed, Polysaccharides, Bacterial/pharmacology, Recombinant Proteins/genetics/isolation & purification/pharmacology | Phylogeny |
Metabolism | 14608423 | The concentrations of hexadecane and inorganic nutrients modulate the production of extracellular membrane-bound vesicles, soluble protein, and bioemulsifier by Acinetobacter venetianus RAG-1 and Acinetobacter sp. strain HO1-N. | Leahy JG, Khalid ZM, Quintero EJ, Jones-Meehan JM, Heidelberg JF, Batchelor PJ, Colwell RR | Can J Microbiol | 10.1139/w03-071 | 2003 | Acinetobacter/classification/*drug effects/isolation & purification/metabolism, Alkanes/*pharmacology, Bacterial Proteins/*metabolism, Cytoplasmic Vesicles/metabolism, Emulsions/chemistry/metabolism | Phylogeny |
Metabolism | 15614556 | Emulsan quantitation by Nile red quenching fluorescence assay. | Castro GR, Larson BK, Panilaitis B, Kaplan DL | Appl Microbiol Biotechnol | 10.1007/s00253-004-1849-2 | 2004 | Acinetobacter/metabolism, Evaluation Studies as Topic, Fluorescence, Oxazines/metabolism, Polysaccharides, Bacterial/*analysis/metabolism, Spectrometry, Fluorescence/*methods | |
Metabolism | 16172888 | Novel polysaccharide-protein-based amphipathic formulations. | Bach H, Gutnick DL | Appl Microbiol Biotechnol | 10.1007/s00253-005-0149-9 | 2005 | Acinetobacter/*metabolism, Alkanes/metabolism, Animals, Bacterial Proteins/biosynthesis/*metabolism, Emulsions/chemistry/metabolism, Esterases/biosynthesis/*metabolism, Insecta/chemistry, Plants/chemistry, Polysaccharides/chemical synthesis/*metabolism, Polysaccharides, Bacterial/metabolism, Recombinant Proteins/biosynthesis/metabolism | |
Enzymology | 16237525 | A unique polypeptide from the C-terminus of the exocellular esterase of Acinetobacter venetianus RAG-1 modulates the emulsifying activity of the polymeric bioemulsifier apoemulsan. | Bach H, Gutnick DL | Appl Microbiol Biotechnol | 10.1007/s00253-005-0161-0 | 2005 | Acinetobacter/*enzymology/genetics, Alkanes/chemistry, Amino Acid Sequence, Carrier Proteins/genetics, Consensus Sequence, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Esterases/biosynthesis/*chemistry/genetics/*metabolism, Maltose-Binding Proteins, Molecular Sequence Data, Peptide Fragments/*chemistry/metabolism, Polymerase Chain Reaction, Polysaccharides, Bacterial/*chemistry, Recombinant Proteins/genetics/metabolism, Sequence Alignment | Metabolism |
Metabolism | 17241359 | Biosynthesis of emulsan biopolymers from agro-based feedstocks. | Panilaitis B, Castro GR, Solaiman D, Kaplan DL | J Appl Microbiol | 10.1111/j.1365-2672.2006.03078.x | 2007 | Acinetobacter/*metabolism, *Agriculture, Animal Feed, Animals, Antibody Formation, Biodegradation, Environmental, Cell Line, Fats, Fatty Acids/*metabolism, Immunoglobulin G/blood, *Industrial Microbiology, Macrophage Activation, Mice, Mice, Inbred BALB C, Polysaccharides, Bacterial/analysis/*biosynthesis/immunology, Soybeans | Biotechnology |
18093811 | Mechanical properties of hexadecane-water interfaces with adsorbed hydrophobic bacteria. | Kang Z, Yeung A, Foght JM, Gray MR | Colloids Surf B Biointerfaces | 10.1016/j.colsurfb.2007.10.021 | 2007 | Acinetobacter/chemistry, Adsorption, Algorithms, Alkanes/*chemistry, Bacteria/*chemistry, Elasticity, Membranes, Artificial, Microscopy, Electron, Transmission, Rhodococcus/chemistry, Surface Tension, Water/*chemistry | ||
Metabolism | 18239917 | Construction of a chimeric gene cluster for the biosynthesis of apoemulsan with altered molecular weight. | Dams-Kozlowska H, Sainath N, Kaplan DL | Appl Microbiol Biotechnol | 10.1007/s00253-008-1346-0 | 2008 | Acinetobacter/genetics/*metabolism, Biopolymers/chemistry/genetics/metabolism, DNA, Bacterial/genetics, Electrophoresis, Polyacrylamide Gel, Escherichia coli/genetics, *Genetic Engineering, Hydrophobic and Hydrophilic Interactions, Molecular Weight, *Multigene Family, Polysaccharides, Bacterial/chemistry/*genetics/*metabolism | Enzymology |
18355095 | Atomic force microscopy measurement of heterogeneity in bacterial surface hydrophobicity. | Dorobantu LS, Bhattacharjee S, Foght JM, Gray MR | Langmuir | 10.1021/la7035295 | 2008 | Acinetobacter/*chemistry/*ultrastructure, *Hydrophobic and Hydrophilic Interactions, Microscopy, Atomic Force, Microscopy, Electron, Transmission, Rhodococcus/*chemistry/*ultrastructure, Surface Properties | ||
Phylogeny | 18547107 | Discovery of the dual polysaccharide composition of emulsan and the isolation of the emulsion stabilizing component. | Mercaldi MP, Dams-Kozlowska H, Panilaitis B, Joyce AP, Kaplan DL | Biomacromolecules | 10.1021/bm800239p | 2008 | Acinetobacter, Cations, Emulsions, Excipients, Fatty Acids/analysis, Lipopolysaccharides, Polysaccharides, Bacterial/*chemistry/isolation & purification, Static Electricity | Enzymology |
Enzymology | 18720025 | Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. | Snellman EA, Colwell RR | Antonie Van Leeuwenhoek | 10.1007/s10482-008-9276-5 | 2008 | Acinetobacter/chemistry/*enzymology/genetics, Bacterial Proteins/chemistry/isolation & purification/*metabolism, Esterification, Hexanes/metabolism, Lipase/chemistry/isolation & purification/*metabolism, Substrate Specificity | Metabolism |
Metabolism | 18778923 | Hydrophobic bacteria at the hexadecane-water interface: examination of micrometre-scale interfacial properties. | Kang Z, Yeung A, Foght JM, Gray MR | Colloids Surf B Biointerfaces | 10.1016/j.colsurfb.2008.07.015 | 2008 | Acinetobacter/*physiology, Alkanes/chemistry/*metabolism, Elastic Modulus, Emulsions, *Hydrophobic and Hydrophilic Interactions, Rhodococcus/*physiology, Surface Properties, Water/chemistry/*metabolism | |
Metabolism | 18795287 | Modifications and applications of the Acinetobacter venetianus RAG-1 exopolysaccharide, the emulsan complex and its components. | Dams-Kozlowska H, Mercaldi MP, Panilaitis BJ, Kaplan DL | Appl Microbiol Biotechnol | 10.1007/s00253-008-1664-2 | 2008 | Acinetobacter/genetics/*metabolism, Biosynthetic Pathways/genetics, Genes, Bacterial, Operon, Polysaccharides, Bacterial/*biosynthesis/chemistry/genetics/*isolation & purification | Enzymology |
Enzymology | 19131689 | Influence of deletions in the apoemulsan gene cluster on A. venetianus RAG-1 polysaccharide biosynthesis. | Dams-Kozlowska H, Mercaldi MP, Ramjeawan A, Kaplan DL | J Microbiol Biotechnol | 8150 | 2008 | Acinetobacter/*genetics/metabolism, Cloning, Molecular, Escherichia coli/genetics/metabolism, *Gene Deletion, Genes, Bacterial, Lipopolysaccharides/biosynthesis/*genetics/isolation & purification, Multigene Family, Polysaccharides, Bacterial/*biosynthesis | Metabolism |
Metabolism | 19326114 | Optimizing emulsan production of A. venetianus RAG-1 using response surface methodology. | Su WT, Chen WJ, Lin YF | Appl Microbiol Biotechnol | 10.1007/s00253-009-1957-0 | 2009 | Acinetobacter/*metabolism/ultrastructure, Biometry/methods, Cell Count, Culture Techniques, Ethanol/metabolism, Fermentation, Polysaccharides, Bacterial/*biosynthesis/economics | Biotechnology |
19334745 | Analysis of force interactions between AFM tips and hydrophobic bacteria using DLVO theory. | Dorobantu LS, Bhattacharjee S, Foght JM, Gray MR | Langmuir | 10.1021/la9001237 | 2009 | Acinetobacter/*ultrastructure, *Microscopy, Atomic Force, Rhodococcus/*ultrastructure | ||
Phylogeny | 19502319 | Description of Acinetobacter venetianus ex Di Cello et al. 1997 sp. nov. | Vaneechoutte M, Nemec A, Musilek M, van der Reijden TJ, van den Barselaar M, Tjernberg I, Calame W, Fani R, De Baere T, Dijkshoorn L | Int J Syst Evol Microbiol | 10.1099/ijs.0.003541-0 | 2009 | Acinetobacter/*classification/genetics/isolation & purification/physiology, Amplified Fragment Length Polymorphism Analysis, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal, DNA, Ribosomal Spacer/analysis, DNA-Directed RNA Polymerases/genetics, Fuel Oils, Hemolysis, *Industrial Microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Transfer/genetics, Restriction Mapping, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Genetics |
Metabolism | 22210401 | Molecular and phenotypic characterization of Acinetobacter strains able to degrade diesel fuel. | Mara K, Decorosi F, Viti C, Giovannetti L, Papaleo MC, Maida I, Perrin E, Fondi M, Vaneechoutte M, Nemec A, van den Barselaar M, Dijkshoorn L, Fani R | Res Microbiol | 10.1016/j.resmic.2011.12.002 | 2011 | Acinetobacter/enzymology/*genetics/growth & development/*metabolism, Carbon/metabolism, Cell Wall/chemistry, Culture Media/chemistry, Cytochrome P-450 CYP4A/*genetics/*metabolism, DNA, Bacterial/chemistry/genetics, *Energy Metabolism, Gasoline/*microbiology, Hydrophobic and Hydrophilic Interactions, Molecular Sequence Data, Sequence Analysis, DNA, Sodium Chloride/metabolism | Genetics |
Genetics | 22887671 | Draft genome sequence of the hydrocarbon-degrading and emulsan-producing strain Acinetobacter venetianus RAG-1T. | Fondi M, Orlandini V, Emiliani G, Papaleo MC, Maida I, Perrin E, Vaneechoutte M, Dijkshoorn L, Fani R | J Bacteriol | 10.1128/JB.01019-12 | 2012 | Acinetobacter/classification/*genetics/isolation & purification/metabolism, Base Sequence, Chromosome Mapping, DNA, Bacterial/genetics, *Genome, Bacterial, Hydrocarbons/metabolism, Molecular Sequence Data, Polysaccharides, Bacterial/metabolism, Sequence Analysis, DNA | Metabolism |
Phylogeny | 26902269 | Genomic and phenotypic characterization of the species Acinetobacter venetianus. | Fondi M, Maida I, Perrin E, Orlandini V, La Torre L, Bosi E, Negroni A, Zanaroli G, Fava F, Decorosi F, Giovannetti L, Viti C, Vaneechoutte M, Dijkshoorn L, Fani R | Sci Rep | 10.1038/srep21985 | 2016 | Acinetobacter/classification/*genetics/metabolism, Alkanes/*metabolism, Biodegradation, Environmental, DNA, Bacterial/*genetics, Genome Size, *Genome, Bacterial, Hydrolysis, Microarray Analysis, Multigene Family, Operon, Petroleum/*metabolism, Phenotype, Phylogeny, Sequence Analysis, DNA | Metabolism |
Metabolism | 27664055 | Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization. | Kothari A, Charrier M, Wu YW, Malfatti S, Zhou CE, Singer SW, Dugan L, Mukhopadhyay A | FEMS Microbiol Lett | 10.1093/femsle/fnw224 | 2016 | Acetates/metabolism, Acinetobacter/*genetics/*metabolism, Alkanes/*metabolism, Biodegradation, Environmental, Biological Transport/*genetics, DNA, Bacterial/genetics, Dodecanol/*metabolism, Fimbriae, Bacterial/*genetics, Gene Expression Profiling, Membrane Transport Proteins/*genetics, Petroleum Pollution, Sequence Analysis, DNA | Transcriptome |
Metabolism | 33556770 | Enhanced degradation of different crude oils by defined engineered consortia of Acinetobacter venetianus RAG-1 mutants based on their alkane metabolism. | Liu J, Zhao B, Lan Y, Ma T | Bioresour Technol | 10.1016/j.biortech.2021.124787 | 2021 | *Acinetobacter/genetics, Alkanes, Biodegradation, Environmental, *Petroleum | Biotechnology |
Metabolism | 36169310 | A Novel FadL Homolog, AltL, Mediates Transport of Long-Chain Alkanes and Fatty Acids in Acinetobacter venetianus RAG-1. | Liu J, Chen S, Zhao B, Li G, Ma T | Appl Environ Microbiol | 10.1128/aem.01294-22 | 2022 | *Lipopolysaccharides/metabolism, Fatty Acids/metabolism, Biodegradation, Environmental, Alkanes/metabolism, *Petroleum/metabolism, Membrane Transport Proteins/metabolism, Pseudomonas aeruginosa/genetics, Bacteria/metabolism, Carbon/metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
16671 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23050) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23050 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
29005 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 25438 | ||
42138 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7878 | |||||
56822 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 45561) | https://www.ccug.se/strain?id=45561 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
68369 | Automatically annotated from API 20NE | ||||||
68382 | Automatically annotated from API zym | ||||||
77548 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46716.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
123813 | Curators of the CIP | Collection of Institut Pasteur (CIP 110063) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110063 |