Strain identifier

BacDive ID: 8141

Type strain: Yes

Species: Acinetobacter beijerinckii

Strain Designation: 58a

Strain history: CIP <- 2011, CCUG <- 2005, CCM <- I. Tjernberg, Malmö Hosp., Malmö, Sweden: strain 58a

NCBI tax ID(s): 1217648 (strain), 262668 (species)

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General

@ref: 16612

BacDive-ID: 8141

DSM-Number: 22901

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped, human pathogen

description: Acinetobacter beijerinckii 58a is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human wound.

NCBI tax id

NCBI tax idMatching level
262668species
1217648strain

strain history

@refhistory
16612<- CCUG <- A. Nemec, Centre Epidemiol. and Microbiol., Natl. Inst. Public Health (NIPH), Prague, Czech Republic <- I. Tjernberg, Univ. Lund, Malmö General Hospital, Sweden; 58a
67770DSM 22901 <-- CCUG 51249 <-- A. Nemec <-- I. Tjernberg 58a.
116771CIP <- 2011, CCUG <- 2005, CCM <- I. Tjernberg, Malmö Hosp., Malmö, Sweden: strain 58a

doi: 10.13145/bacdive8141.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter beijerinckii
  • full scientific name: Acinetobacter beijerinckii Nemec et al. 2009

@ref: 16612

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter beijerinckii

full scientific name: Acinetobacter beijerinckii Nemec et al. 2009

strain designation: 58a

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
28906negativeovoid-shapedno
69480negative99.976
116771negativeoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16612TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42145MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116771CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
116771CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
16612positivegrowth28mesophilic
28906positivegrowth25-37mesophilic
28906positiveoptimum31mesophilic
42145positivegrowth30mesophilic
59115positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28906aerobe
59115aerobe
116771obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2890630089acetate+carbon source
2890635391aspartate+carbon source
2890616947citrate+carbon source
2890616236ethanol+carbon source
289065291gelatin+carbon source
2890627570histidine+carbon source
2890625115malate+carbon source
2890615792malonate+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11677117632nitrate-reduction
11677116301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11677135581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
28906catalase+1.11.1.6
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116771oxidase-
116771catalase+1.11.1.6
116771urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116771--++++-----+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16612---------------+-++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
16612human woundMalmöSwedenSWEEurope
59115Human woundMalmöSwedenSWEEurope1980
67770Wound of a patient at the hospital in MalmöSwedenSWEEurope
116771Human, WoundMalmöSwedenSWEEurope1980

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
16612yesyes2Risk group (German classification)
1167711Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16612
  • description: Acinetobacter beijerinckii partial 16S rRNA gene, type strain LUH 4759T
  • accession: AJ626712
  • length: 1374
  • database: ena
  • NCBI tax ID: 262668

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter beijerinckii CIP 1103071217648.3wgspatric1217648
66792Acinetobacter beijerinckii strain GTC 14628262668.4wgspatric262668
66792Acinetobacter beijerinckii GTC 146282671180604draftimg262668
66792Acinetobacter beijerinckii CIP 1103072565956701draftimg1217648
67770Acinetobacter beijerinckii CIP 110307GCA_000369005scaffoldncbi1217648
67770Acinetobacter beijerinckii GTC 14628GCA_000931715contigncbi262668

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.292no
gram-positiveno97.97yes
anaerobicno98.521yes
aerobicyes95.128yes
halophileno88.928no
spore-formingno96.185no
glucose-utilno83.036yes
flagellatedno93.993yes
thermophileno99.899no
glucose-fermentno91.481yes

External links

@ref: 16612

culture collection no.: DSM 22901, CCM 7266, CCUG 51249, JCM 18990, NIPH 838, LUH 4759, CIP 110307, GTC 14628, LMG 25324, NBRC 112579

straininfo link

  • @ref: 77545
  • straininfo: 360498

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19126734Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans.Nemec A, Musilek M, Maixnerova M, De Baere T, van der Reijden TJ, Vaneechoutte M, Dijkshoorn LInt J Syst Evol Microbiol10.1099/ijs.0.001230-02009Acinetobacter/classification/genetics/growth & development/*isolation & purification, Acinetobacter Infections/*microbiology, Animals, Bacterial Typing Techniques, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, DNA-Directed RNA Polymerases/genetics, Environmental Microbiology, Genes, rRNA, *Hemolysis, Humans, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNA, Species SpecificityCultivation
Phylogeny23950148Acinetobacter kookii sp. nov., isolated from soil.Choi JY, Ko G, Jheong W, Huys G, Seifert H, Dijkshoorn L, Ko KSInt J Syst Evol Microbiol10.1099/ijs.0.047969-02013Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Germany, Malaysia, Molecular Sequence Data, Netherlands, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, ThailandGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16612Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22901)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22901
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28906Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2534528776041
42145Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8152
59115Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51249)https://www.ccug.se/strain?id=51249
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77545Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID360498.1StrainInfo: A central database for resolving microbial strain identifiers
116771Curators of the CIPCollection of Institut Pasteur (CIP 110307)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110307