Name: Acinetobacter beijerinckii 58a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8141

Type strain:

Species: Acinetobacter beijerinckii

Strain Designation: 58a

Culture col. no.: DSM 22901, CCM 7266, CCUG 51249, JCM 18990, NIPH 838, LUH 4759, CIP 110307, GTC 14628, LMG 25324, NBRC 112579

Strain history: CIP <- 2011, CCUG <- 2005, CCM <- I. Tjernberg, Malmö Hosp., Malmö, Sweden: strain 58a

NCBI tax ID(s): 1217648 (strain), 262668 (species)

SI-ID 360498

CCUG 51249, CCM 7266, LMG 25324, CIP 110307

Other strains from Acinetobacter beijerinckii

A. beijerinckii CCUG 56139
A. beijerinckii CCUG 56141
A. beijerinckii CCUG 59131
A. beijerinckii CIP 110492, ANC 3835

Section

Acinetobacter beijerinckii 58a is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human wound.

Gram-negative
ovoid-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	**Acinetobacter beijerinckii**
	Full Scientific Name (LPSN)	Acinetobacter beijerinckii Nemec et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28906]	Gram stain	negative
[Ref.: #116771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #28906]	Cell shape	ovoid-shaped
[Ref.: #116771]	Cell shape	oval-shaped

[Ref.: #28906]	Motility	no
[Ref.: #116771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16612]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16612]

Culture medium growth

[Ref.: #16612]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16612]

Culture medium composition

expand / minimize

[Ref.: #42145]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42145]

Culture medium growth

[Ref.: #42145]

Culture medium composition

expand / minimize

[Ref.: #116771]

Culture medium

CIP Medium 72

[Ref.: #116771]

Culture medium growth

[Ref.: #116771]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116771]

Culture medium

CIP Medium 328

[Ref.: #116771]

Culture medium growth

[Ref.: #116771]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16612]	growth	28 °C
[Ref.: #28906]	growth	25-37 °C
[Ref.: #28906]	optimum	31 °C
[Ref.: #42145]	growth	30 °C
[Ref.: #59115]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #16612]	Temperature range	mesophilic
[Ref.: #28906]	Temperature range	mesophilic
[Ref.: #42145]	Temperature range	mesophilic
[Ref.: #59115]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28906]	Oxygen tolerance	aerobe
[Ref.: #59115]	Oxygen tolerance	aerobe
[Ref.: #116771]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28906]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #28906]	aspartate ChEBI	+	carbon source
[Ref.: #28906]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #28906]	ethanol ChEBI	+	carbon source
[Ref.: #28906]	gelatin ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28906]	histidine ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #28906]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #28906]	malonate ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #116771]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #116771]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116771]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #28906]	catalase	+	1.11.1.6
[Ref.: #116771]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116771]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116771]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16612]	23853	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116771]	12509	-	-	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16612]	Sample type/isolated from	human wound
[Ref.: #16612]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #16612]	Country	Sweden
[Ref.: #16612]	Country ISO 3 Code	SWE
[Ref.: #16612]	Continent	Europe

[Ref.: #59115]	Sample type/isolated from	Human wound
[Ref.: #59115]	Sampling date	1980
[Ref.: #59115]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #59115]	Country	Sweden
[Ref.: #59115]	Country ISO 3 Code	SWE
[Ref.: #59115]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Wound of a patient at the hospital in Malmö
[Ref.: #67770]	Country	Sweden
[Ref.: #67770]	Country ISO 3 Code	SWE
[Ref.: #67770]	Continent	Europe

[Ref.: #116771]	Sample type/isolated from	Human, Wound
[Ref.: #116771]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #116771]	Country	Sweden
[Ref.: #116771]	Country ISO 3 Code	SWE
[Ref.: #116771]	Continent	Europe
[Ref.: #116771]	Isolation date	1980
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16612]	Pathogenicity (human)	yes
[Ref.: #16612]	Pathogenicity (animal)	yes
[Ref.: #16612]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116771]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16612]	Acinetobacter beijerinckii partial 16S rRNA gene, type strain LUH 4759T	AJ626712	1374	ENA	262668 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acinetobacter beijerinckii CIP 110307	GCA_000369005	scaffold	GenBank	1217648 tax ID
[Ref.: #67770]	Acinetobacter beijerinckii GTC 14628	GCA_000931715	contig	GenBank	262668 tax ID
[Ref.: #66792]	Acinetobacter beijerinckii CIP 110307	1217648.3	wgs	PATRIC	1217648 tax ID	*
[Ref.: #66792]	Acinetobacter beijerinckii strain GTC 14628	262668.4	wgs	PATRIC	262668 tax ID	*
[Ref.: #66792]	Acinetobacter beijerinckii GTC 14628	2671180604	draft	JGI IMG/M	262668 tax ID	*
[Ref.: #66792]	Acinetobacter beijerinckii CIP 110307	2565956701	draft	JGI IMG/M	1217648 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acinetobacter beijerinckii CIP 110307 CIP 110307 NCBI: GCA_000369005.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter beijerinckii CIP 110307 PATRIC: 1217648.3
[Ref.: #69480]	motile	no	91.292	no
[Ref.: #69480]	gram-positive	no	97.97	yes
[Ref.: #69480]	anaerobic	no	98.521	yes
[Ref.: #69480]	aerobic	yes	95.128	yes
[Ref.: #69480]	halophile	no	88.928	no
[Ref.: #69480]	spore-forming	no	96.185	no
[Ref.: #69480]	glucose-util	no	83.036	yes
[Ref.: #69480]	flagellated	no	93.993	yes
[Ref.: #69480]	thermophile	no	99.899	no
[Ref.: #69480]	glucose-ferment	no	91.481	yes

Availability in culture collections External links

[Ref.: #16612]

Culture collection no.

DSM 22901, CCM 7266, CCUG 51249, JCM 18990, NIPH 838, LUH 4759, CIP 110307, GTC 14628, LMG 25324, NBRC 112579

[Ref.: #77545]

SI-ID 360498

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter kookii sp. nov., isolated from soil.	Choi JY, Ko G, Jheong W, Huys G, Seifert H, Dijkshoorn L, Ko KS	Int J Syst Evol Microbiol	10.1099/ijs.0.047969-0	2013	*
Phylogeny	Acinetobacter beijerinckii sp. nov. and Acinetobacter gyllenbergii sp. nov., haemolytic organisms isolated from humans.	Nemec A, Musilek M, Maixnerova M, De Baere T, van der Reijden TJ, Vaneechoutte M, Dijkshoorn L	Int J Syst Evol Microbiol	10.1099/ijs.0.001230-0	2009	*

References

#16612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22901

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28906

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25345 (see below)

#42145 ; Curators of the CIP;
#59115 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51249

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77545

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360498.1 )

#116771 Collection of Institut Pasteur ; Curators of the CIP; CIP 110307

#25345

IJSEM 118 2009 ( DOI 10.1099/ijs.0.001230-0 , PubMed 19126734 )

* These data were automatically processed and therefore are not curated

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Acinetobacter beijerinckii CIP 110307 CIP 110307

Acinetobacter beijerinckii CIP 110307

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