Strain identifier

BacDive ID: 8096

Type strain: Yes

Species: Acinetobacter radioresistens

Strain Designation: FO-1

Strain history: CIP <- 1993, Y. Nishimura, Tokyo Univ., Japan: strain FO-1 <- E. Kairiyama, National Commission of Atomic Energy of Argentina

NCBI tax ID(s): 981334 (strain), 40216 (species)

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General

@ref: 2932

BacDive-ID: 8096

DSM-Number: 6976

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Acinetobacter radioresistens FO-1 is an aerobe, mesophilic bacterium that was isolated from cotton tampon.

NCBI tax id

NCBI tax idMatching level
981334strain
40216species

strain history

@refhistory
2932<- ATCC <- N. Yukimasa <- E. Kairiyama; FO-1
67770Y. Nishimura FO-1.
122124CIP <- 1993, Y. Nishimura, Tokyo Univ., Japan: strain FO-1 <- E. Kairiyama, National Commission of Atomic Energy of Argentina

doi: 10.13145/bacdive8096.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter radioresistens
  • full scientific name: Acinetobacter radioresistens Nishimura et al. 1988

@ref: 2932

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter radioresistens

full scientific name: Acinetobacter radioresistens Nishimura et al. 1988

strain designation: FO-1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.907
6948099.991negative
122124nonegativerod-shaped

colony morphology

@refincubation period
29321-2 days
122124

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2932CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42125MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122124CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
122124CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2932positivegrowth28mesophilic
42125positivegrowth30mesophilic
60958positivegrowth30-37mesophilic
67770positivegrowth30mesophilic
122124positivegrowth30-41
122124nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60958
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no92
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
122124NaClpositivegrowth0-4 %
122124NaClnogrowth6 %
122124NaClnogrowth8 %
122124NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12212417632nitrate-reduction
12212416301nitrite-reduction
12212417234glucose-degradation

antibiotic resistance

  • @ref: 122124
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
2932catalase+1.11.1.6
2932cytochrome-c oxidase+1.9.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
122124oxidase-
122124beta-galactosidase-3.2.1.23
122124gelatinase-
122124catalase+1.11.1.6
122124gamma-glutamyltransferase-2.3.2.2
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
60958-+++-+--------------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
60958----------------+--+-
2932----------------+--+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2932cotton tampon
60958CottonArgentinaARGMiddle and South America
67770Cotton
122124Plant, CottonArgentinaARGMiddle and South America

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Host#Plants#Shrub (Scrub)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29321Risk group (German classification)
1221241Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acinetobacter radioresistens 16S rRNA gene, partialAJ247209452ena981334
2932A.radioresistens 16S rRNA gene (DSM6976)X816661459ena981334

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788GCA_006757745completencbi981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788GCA_000368905scaffoldncbi981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.20wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.4wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.6wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.10wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.3wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.8wgspatric981334
66792Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788981334.9wgspatric981334
66792Acinetobacter radioresistens FO-1, DSM 69762531839506draftimg981334
66792Acinetobacter radioresistens FO-1, DSM 69762547132307draftimg981334
66792Acinetobacter radioresistens FO-1, DSM 69762529293101draftimg981334
67770Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788GCA_000248115contigncbi981334

GC content

  • @ref: 2932
  • GC-content: 44.1-44.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno92no
motileno92.013no
flagellatedno95.984no
gram-positiveno97.85no
anaerobicno97.048yes
aerobicyes91.481no
halophileno89.183no
spore-formingno97.192no
thermophileno99.528yes
glucose-utilno87.284yes
glucose-fermentno90.2yes

External links

@ref: 2932

culture collection no.: DSM 6976, ATCC 43998, IAM 13186, CCUG 56440, CIP 103788, LMG 10613, JCM 9326, NBRC 102413, NCIMB 12753

straininfo link

  • @ref: 77523
  • straininfo: 13542

literature

  • topic: Phylogeny
  • Pubmed-ID: 22247213
  • title: Acinetobacter indicus sp. nov., isolated from a hexachlorocyclohexane dump site.
  • authors: Malhotra J, Anand S, Jindal S, Rajagopal R, Lal R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037721-0
  • year: 2012
  • mesh: Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Hexachlorocyclohexane/*analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/analysis, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2932Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6976)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6976
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42125Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15624
60958Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56440)https://www.ccug.se/strain?id=56440
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77523Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13542.1StrainInfo: A central database for resolving microbial strain identifiers
122124Curators of the CIPCollection of Institut Pasteur (CIP 103788)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103788