Acinetobacter radioresistens FO-1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from cotton tampon.
Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter radioresistens |
| Full scientific name Acinetobacter radioresistens Nishimura et al. 1988 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2932 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 42125 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 122124 | CIP Medium 3 | Medium recipe at CIP | |||
| 122124 | CIP Medium 72 | Medium recipe at CIP | |||
| 2932 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 2932 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | Medium recipe at MediaDive | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
| 67770 | Observationquinones: Q-9 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 122124 | 17234 ChEBI | glucose | - | degradation | |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 122124 | 17632 ChEBI | nitrate | - | reduction | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 122124 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 122124 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 122124 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 2932 | catalase | + | 1.11.1.6 | |
| 122124 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 2932 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 122124 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 122124 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 122124 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM675774v1 assembly for Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | complete | 981334 | 97.96 | ||||
| 66792 | Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 78.01 | ||||
| 66792 | Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 76.7 | ||||
| 66792 | Acin_radi_CIP_103788_V1 assembly for Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | scaffold | 981334 | 75 | ||||
| 66792 | Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 59.6 | ||||
| 66792 | Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 7.5 | ||||
| 124043 | ASM30807v1 assembly for Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 5.64 | ||||
| 67770 | ASM24811v2 assembly for Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 | contig | 981334 | 0 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Acinetobacter radioresistens 16S rRNA gene, partial | AJ247209 | 452 | 981334 | ||
| 2932 | A.radioresistens 16S rRNA gene (DSM6976) | X81666 | 1459 | 981334 | ||
| 124043 | Acinetobacter radioresistens gene for 16S rRNA, partial sequence, strain: NBRC 102413. | AB681769 | 1462 | 40216 | ||
| 124043 | Acinetobacter radioresistens strain NBRC 102413 16S ribosomal RNA gene, partial sequence. | MN526993 | 486 | 40216 | ||
| 124043 | Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 16S ribosomal RNA gene, partial sequence. | PQ524577 | 600 | 981334 | ||
| 124043 | Acinetobacter radioresistens strain DSM 6976(T) 16S ribosomal RNA gene, partial sequence. | PP422299 | 1387 | 40216 | ||
| 124043 | Acinetobacter radioresistens strain NBRC 102413 16S ribosomal RNA gene, partial sequence. | MH201144 | 854 | 40216 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 2932 | 44.1 | sequence analysis |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 96.81 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 81.41 | no |
| 125439 | motility | BacteriaNetⓘ | no | 62.23 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.55 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.56 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.45 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.79 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.98 | no |
| 125438 | flagellated | motile2+ⓘ | no | 80.25 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Identification of Acinetobacter radioresistens in wastewater effluent from a First Nation reserve in Manitoba, Canada. | Patel R, White D, Kumar A, Uyaguari M. | Microbiol Resour Announc | 10.1128/mra.00221-25 | 2025 | |
| Clonal dissemination of Acinetobacter radioresistens among Humboldt penguins (Spheniscus humboldti) inhabiting a barren northern Peruvian island. | Roca I, Espinoza K, Irigoin-Lovera C, Piquet M, Palomino-Kobayashi LA, Castillo AK, Gonzales-DelCarpio DD, Vines J, Munoz L, Ymana B, Oporto R, Zavalaga C, Pons MJ, Ruiz J. | Eur J Microbiol Immunol (Bp) | 10.1556/1886.2023.00066 | 2024 | ||
| Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii Isolates from Northern Africa and the Middle East. | Higgins PG, Hagen RM, Kreikemeyer B, Warnke P, Podbielski A, Frickmann H, Loderstadt U. | Antibiotics (Basel) | 10.3390/antibiotics10030291 | 2021 | ||
| Contamination analysis of Arctic ice samples as planetary field analogs and implications for future life-detection missions to Europa and Enceladus. | Coelho LF, Blais MA, Matveev A, Keller-Costa T, Vincent WF, Costa R, Martins Z, Canario J. | Sci Rep | 10.1038/s41598-022-16370-5 | 2022 | ||
| Genetics | Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes. | Versluis D, Rodriguez de Evgrafov M, Sommer MO, Sipkema D, Smidt H, van Passel MW. | Front Microbiol | 10.3389/fmicb.2016.01848 | 2016 | |
| Identification of a self-sufficient cytochrome P450 monooxygenase from Cupriavidus pinatubonensis JMP134 involved in 2-hydroxyphenylacetic acid catabolism, via homogentisate pathway. | Donoso RA, Ruiz D, Garate-Castro C, Villegas P, Gonzalez-Pastor JE, de Lorenzo V, Gonzalez B, Perez-Pantoja D. | Microb Biotechnol | 10.1111/1751-7915.13865 | 2021 | ||
| In silico design and validation of a highly degenerate primer pair: a systematic approach. | Chukwuemeka PO, Umar HI, Olukunle OF, Oretade OM, Olowosoke CB, Akinsola EO, Elabiyi MO, Kurmi UG, Eigbe JO, Oyelere BR, Isunu LE, Oretade OJ. | J Genet Eng Biotechnol | 10.1186/s43141-020-00086-y | 2020 | ||
| A comprehensive genomic analysis provides insights on the high environmental adaptability of Acinetobacter strains. | Zhao Y, Wei HM, Yuan JL, Xu L, Sun JQ. | Front Microbiol | 10.3389/fmicb.2023.1177951 | 2023 | ||
| Enzymology | Comprehensive Laboratory Evaluation of a Specific Lateral Flow Assay for the Presumptive Identification of Francisella tularensis in Suspicious White Powders and Aerosol Samples. | Pillai SP, DePalma L, Prentice KW, Ramage JG, Chapman C, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Singh A, Pillai CA, Manickam G, Thirunavkkarasu N, Avila JR, Sharma S, Morse SA, Venkateswaran K, Anderson K, Hodge DR. | Health Secur | 10.1089/hs.2019.0151 | 2020 | |
| Phylogeny | Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris). | de Oliveira Costa LE, de Queiroz MV, Borges AC, de Moraes CA, de Araujo EF. | Braz J Microbiol | 10.1590/s1517-838220120004000041 | 2012 | |
| Enzymology | Comprehensive Laboratory Evaluation of a Lateral Flow Assay for the Detection of Yersinia pestis. | Prentice KW, DePalma L, Ramage JG, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Joshi M, Thirunavvukarasu N, Singh A, Chapman C, Avila JR, Pillai CA, Manickam G, Sharma SK, Morse SA, Venkateswaran KV, Anderson K, Hodge DR, Pillai SP. | Health Secur | 10.1089/hs.2019.0094 | 2019 | |
| Enzymology | Comprehensive Laboratory Evaluation of a Highly Specific Lateral Flow Assay for the Presumptive Identification of Bacillus anthracis Spores in Suspicious White Powders and Environmental Samples. | Ramage JG, Prentice KW, DePalma L, Venkateswaran KS, Chivukula S, Chapman C, Bell M, Datta S, Singh A, Hoffmaster A, Sarwar J, Parameswaran N, Joshi M, Thirunavkkarasu N, Krishnan V, Morse S, Avila JR, Sharma S, Estacio PL, Stanker L, Hodge DR, Pillai SP. | Health Secur | 10.1089/hs.2016.0041 | 2016 | |
| Development of a Colloidal Gold-Based Immunochromatographic Strip for Rapid Detection of Klebsiella pneumoniae Serotypes K1 and K2. | Siu LK, Tsai YK, Lin JC, Chen TL, Fung CP, Chang FY. | J Clin Microbiol | 10.1128/jcm.01608-16 | 2016 | ||
| Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features. | Bergogne-Berezin E, Towner KJ. | Clin Microbiol Rev | 10.1128/cmr.9.2.148 | 1996 | ||
| Genetics | Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts. | Saffarian A, Touchon M, Mulet C, Tournebize R, Passet V, Brisse S, Rocha EPC, Sansonetti PJ, Pedron T. | BMC Genomics | 10.1186/s12864-017-3925-x | 2017 | |
| Acinetobacter radioresistens infection with bacteremia and pneumonia. | Wang T, Costa V, Jenkins SG, Hartman BJ, Westblade LF. | IDCases | 10.1016/j.idcr.2019.e00495 | 2019 | ||
| Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Acinetobacter radioresistens Strain SA188 Isolated from the Desert Plant Indigofera argentea. | Lafi FF, Alam I, Bisseling T, Geurts R, Bajic VB, Hirt H, Saad MM. | Genome Announc | 10.1128/genomea.01708-16 | 2017 | ||
| Cellulose Derived Graphene/Polyaniline Nanocomposite Anode for Energy Generation and Bioremediation of Toxic Metals via Benthic Microbial Fuel Cells. | Yaqoob AA, Yaqoob AA, Mohamad Ibrahim MN, Umar K, Bhawani SA, Khan A, Asiri AM, Khan MR, Azam M, AlAmmari AM. | Polymers (Basel) | 10.3390/polym13010135 | 2020 | ||
| Exogenous and endogenous microbiomes of wild-caught Phormia regina (Diptera: Calliphoridae) flies from a suburban farm by 16S rRNA gene sequencing. | Deguenon JM, Travanty N, Zhu J, Carr A, Denning S, Reiskind MH, Watson DW, Michael Roe R, Ponnusamy L. | Sci Rep | 10.1038/s41598-019-56733-z | 2019 | ||
| Genome Sequence and Characterization of a Xanthorhodopsin-Containing, Aerobic Anoxygenic Phototrophic Rhodobacter Species, Isolated from Mesophilic Conditions at Yellowstone National Park. | Kyndt JA, Robertson S, Shoffstall IB, Ramaley RF, Meyer TE. | Microorganisms | 10.3390/microorganisms10061169 | 2022 | ||
| Efficacies of Various Anaerobic Starter Seeds for Biogas Production from Different Types of Wastewater. | Chaiprasert P, Hudayah N, Auphimai C. | Biomed Res Int | 10.1155/2017/2782850 | 2017 | ||
| Metabolism | Commensal Bacteria Regulate Gene Expression and Differentiation in Vertebrate Olfactory Systems Through Transcription Factor REST. | Casadei E, Tacchi L, Lickwar CR, Espenschied ST, Davison JM, Munoz P, Rawls JF, Salinas I. | Chem Senses | 10.1093/chemse/bjz050 | 2019 | |
| Phylogeny | Acinetobacter indicus sp. nov., isolated from a hexachlorocyclohexane dump site. | Malhotra J, Anand S, Jindal S, Rajagopal R, Lal R | Int J Syst Evol Microbiol | 10.1099/ijs.0.037721-0 | 2012 |
| #2932 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6976 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #42125 | ; Curators of the CIP; |
| #60958 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56440 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #122124 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103788 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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