Strain identifier
BacDive ID: 8057
Type strain:
Species: Acinetobacter calcoaceticus
Strain history: CIP <- 1981, ATCC <- M. Doudoroff: strain 46, Moraxella calcoacetica <- Lab. voor Microbiol., The Netherlands: strain Delf 1, Micrococcus calcoaceticus designated as strain 317 until 1922 <- M.W. Beijerinck
NCBI tax ID(s): 981331 (strain), 471 (species)
General
@ref: 9083
BacDive-ID: 8057
DSM-Number: 30006
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, oval-shaped
description: Acinetobacter calcoaceticus DSM 30006 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from quinate enrichment from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
471 | species |
981331 | strain |
strain history
@ref | history |
---|---|
9083 | <- CIP <- ATCC <- M. Doudoroff; 46 <- LMD <- M.W. Beijerinck |
67770 | ATCC 23055 <-- M. Doudoroff 46 <-- Lab. Microbiol., Delft; strain 1 <-- M. W. Beijerinck. |
117098 | CIP <- 1981, ATCC <- M. Doudoroff: strain 46, Moraxella calcoacetica <- Lab. voor Microbiol., The Netherlands: strain Delf 1, Micrococcus calcoaceticus designated as strain 317 until 1922 <- M.W. Beijerinck |
doi: 10.13145/bacdive8057.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter calcoaceticus
- full scientific name: Acinetobacter calcoaceticus (Beijerinck 1911) Baumann et al. 1968 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Micrococcus calcoaceticus
@ref: 9083
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter calcoaceticus
full scientific name: Acinetobacter calcoaceticus (Beijerinck 1911) Baumann et al. 1968 emend. Bouvet and Grimont 1986
type strain: yes
Morphology
cell morphology
- @ref: 117098
- gram stain: negative
- cell shape: oval-shaped
- motility: no
colony morphology
@ref | type of hemolysis | incubation period |
---|---|---|
9083 | gamma | 1-2 days |
117098 |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
42150 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
9083 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | https://mediadive.dsmz.de/medium/693 |
9083 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
117098 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
117098 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
42150 | positive | growth | 30 | mesophilic |
9083 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
117098 | positive | growth | 10-37 | |
117098 | no | growth | 41 | thermophilic |
117098 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 117098
- oxygen tolerance: obligate aerobe
antibiogram
@ref | medium | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam | incubation temperature | oxygen condition | incubation time |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9083 | Mueller-Hinton Agar | 30 | 42 | 40 | >50 | >50 | 30 | 34-36 | >50 | >50 | >50 | >50 | 38 | 40 | 42 | 30 | >50 | 0 | >50 | >50 | 22 | 34 | 30 | 40 | 22 | >50 | 30 | >50 | >50 | 30 | 22-24 | >50 | 24 | 0 | 38 | 20 | >50 | |||
9083 | Mueller-Hinton Agar | 22 | 34 | 32 | 46-48 | 40 | 22 | 28-30 | 42 | 40 | 46-48 | 42 | 28-30 | 32 | 34 | 20 | 42 | 18 | 42 | 40 | 18 | 26 | 22-24 | 32 | 20 | 36 | 28-30 | 44 | 42 | 30 | 12 | 44 | 30 | 0 | 32 | 14-16 | 46 | 30 | aerob | |
9083 | Mueller-Hinton Agar | 28 | 38 | 34 | >50 | 46 | 28-30 | 32-34 | 50 | 44 | >50 | 46-48 | 30 | 30 | 34 | 24-26 | 40 | 18-20 | 42 | 40 | 18 | 28 | 26 | 32 | 20 | 32 | 26 | 42 | 46-48 | 30 | 14 | 42 | 30 | 0 | 32 | 16 | 48 | 30 | aerob | 1 |
compound production
@ref | compound |
---|---|
9083 | isoprene |
20216 | Isoprene |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
117098 | NaCl | positive | growth | 0-2 % |
117098 | NaCl | no | growth | 4 % |
117098 | NaCl | no | growth | 6 % |
117098 | NaCl | no | growth | 8 % |
117098 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
68368 | 17632 | nitrate | - | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | - | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
117098 | 17632 | nitrate | - | reduction |
117098 | 16301 | nitrite | - | reduction |
117098 | 17234 | glucose | +/- | degradation |
117098 | 17632 | nitrate | - | respiration |
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68369 | 35581 | indole | no |
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | no |
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
117098 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68374 | 35581 | indole | - | ||
68369 | 35581 | indole | - | ||
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
117098 | 15688 | acetoin | - | ||
117098 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
9083 | catalase | + | 1.11.1.6 |
9083 | cytochrome-c oxidase | - | 1.9.3.1 |
68374 | L-aspartate arylamidase | + | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | - | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
117098 | oxidase | - | |
117098 | beta-galactosidase | - | 3.2.1.23 |
117098 | gelatinase | - | |
117098 | catalase | + | 1.11.1.6 |
117098 | gamma-glutamyltransferase | - | 2.3.2.2 |
117098 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117098 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9083 | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | + | - | + | +/- | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9083 | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | + | + | + | + | + | - |
9083 | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | + | + | + | |
9083 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | ||
9083 | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | + | + | + | + | + | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
45829 | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117098 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | - | - | - | - | + | - | - | - | + | + | + | - | - | + | + | + | - | - | + | + | - | + | - | + | + | + | + | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
9083 | quinate enrichment from soil | |||||
45829 | Soil,quinate enrichment | 1909 | Delft | Netherlands | NLD | Europe |
67770 | Soil | |||||
117098 | Environment, Soil enriched with quinate |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_95.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_38;98_86;99_95&stattab=map
- Last taxonomy: Acinetobacter
- 16S sequence: X81661
- Sequence Identity:
- Total samples: 46266
- soil counts: 7889
- aquatic counts: 12125
- animal counts: 20278
- plant counts: 5974
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9083 | 2 | Risk group (German classification) |
117098 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter calcoaceticus 16S rRNA gene, partial | AJ247199 | 452 | ena | 981331 |
20218 | Acinetobacter calcoaceticus partial 16S rRNA gene, type strain ATCC 23055 | AJ888984 | 1511 | ena | 471 |
20218 | Acinetobacter calcoaceticus strain DSM30006 16S ribosomal RNA gene, partial sequence | EF611409 | 452 | ena | 981331 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 01 | HE651573 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 03 | HE651574 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 04 | HE651575 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 05 | HE651576 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 06 | HE651577 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 07 | HE651578 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 08 | HE651579 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 09 | HE651580 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 10 | HE651581 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 11 | HE651582 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 12 | HE651583 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 14 | HE651584 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus genomic DNA containing 16S rRNA-23S rRNA IGS, strain ATCC 23055, clone 15 | HE651585 | 639 | ena | 471 |
20218 | Acinetobacter calcoaceticus 16S rRNA gene, strain ATCC 23055 | HE651903 | 1530 | ena | 471 |
20218 | Acinetobacter calcoaceticus 16S-23S ribosomal RNA intergenic spacer, including Ile-tRNA and Ala-tRNA genes | U60278 | 638 | ena | 471 |
20218 | A.calcoaceticus 16S rRNA gene (strain ATCC 23055T) | Z93434 | 1417 | ena | 471 |
9083 | A.calcoaceticus 16S rRNA gene (DSM30006) | X81661 | 1460 | ena | 981331 |
9083 | Acinetobacter calcoaceticus 16S rRNA gene, type strain DSM 30006T | AJ633632 | 1463 | ena | 981331 |
67770 | Acinetobacter calcoaceticus gene for 16S rRNA, partial sequence, strain: JCM 6842 | AB626122 | 1460 | ena | 471 |
67770 | Acinetobacter calcoaceticus 16S rRNA gene, type strain LMG 1046T | AJ633631 | 1462 | ena | 471 |
67770 | Acinetobacter calcoaceticus partial 16S rRNA gene, type strain NCCB 22016 | AJ888983 | 1516 | ena | 983712 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 | 981331.5 | wgs | patric | 981331 |
66792 | Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 | 981331.3 | wgs | patric | 981331 |
66792 | Acinetobacter calcoaceticus strain KCTC 2357 | 471.18 | wgs | patric | 471 |
66792 | Acinetobacter calcoaceticus strain NCTC12983 | 471.46 | wgs | patric | 471 |
66792 | Acinetobacter calcoaceticus DSM 30006 | 2547132303 | draft | img | 981331 |
66792 | Acinetobacter calcoaceticus DSM 30006 | 2534682017 | draft | img | 981331 |
66792 | Acinetobacter calcoaceticus KCTC 2357 | 2660238279 | draft | img | 471 |
67770 | Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 | GCA_000248175 | contig | ncbi | 981331 |
67770 | Acinetobacter calcoaceticus DSM 30006 = CIP 81.8 | GCA_000368965 | scaffold | ncbi | 981331 |
67770 | Acinetobacter calcoaceticus KCTC 2357 | GCA_000931735 | contig | ncbi | 471 |
67770 | Acinetobacter calcoaceticus NCTC12983 | GCA_900444805 | contig | ncbi | 471 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 89.249 | no |
flagellated | no | 92.696 | no |
gram-positive | no | 97.503 | no |
anaerobic | no | 98.292 | no |
halophile | no | 85.927 | no |
spore-forming | no | 96.832 | no |
thermophile | no | 99.908 | yes |
glucose-util | no | 70.538 | no |
aerobic | yes | 93.233 | no |
glucose-ferment | no | 79.292 | no |
External links
@ref: 9083
culture collection no.: DSM 30006, ATCC 23055, CIP 81.08, CIP 81.8, LMD 22.16, CCUG 12804, LMG 1046, IFO 13718, Delft L360, JCM 6842, CECT 441, IAM 12087, KCTC 2357, LMG 10511, NBIMCC 3730, NBRC 13718, NCCB 22016, NCIMB 10694, NCTC 12983, VTT E-981117, LMD 98116
straininfo link
- @ref: 77485
- straininfo: 3966
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1512577 | Purification and characterization of L-2,4-diaminobutyrate decarboxylase from Acinetobacter calcoaceticus. | Yamamoto S, Tsuzaki Y, Tougou K, Shinoda S | J Gen Microbiol | 10.1099/00221287-138-7-1461 | 1992 | Acinetobacter calcoaceticus/*enzymology, Amino Acid Sequence, Carboxy-Lyases/chemistry/isolation & purification/*metabolism, Cations/metabolism, Enzyme Stability, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Pyridoxal Phosphate/metabolism, Substrate Specificity, Temperature, Vibrio/*enzymology | Metabolism |
Enzymology | 3210151 | Taxonomic studies of Acinetobacter species based on the electrophoretic analysis of enzymes. | Nishimura Y, Kanzaki H, Iizuka H | J Basic Microbiol | 10.1002/jobm.3620280605 | 1988 | Acinetobacter/*classification/enzymology, Electrophoresis, Polyacrylamide Gel, Enzymes/*analysis, Gossypium, *Soil Microbiology | Phylogeny |
Enzymology | 8690717 | Cloning and expression of dipeptidase from Acinetobacter calcoaceticus ATCC 23055. | Adachi H, Tsujimoto M | J Biochem | 10.1093/oxfordjournals.jbchem.a124945 | 1995 | Acinetobacter calcoaceticus/*enzymology, Amino Acid Sequence, Base Sequence, Cloning, Molecular, Dipeptides/metabolism, Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/biosynthesis/*genetics/*metabolism, Escherichia coli/enzymology/genetics, Gene Expression, Humans, Hydrolysis, Molecular Sequence Data, Recombinant Proteins/isolation & purification/metabolism, Sequence Homology, Amino Acid, Substrate Specificity | Metabolism |
Cultivation | 18422628 | Biofilm formation and interactions of bacterial strains found in wastewater treatment systems. | Andersson S, Kuttuva Rajarao G, Land CJ, Dalhammar G | FEMS Microbiol Lett | 10.1111/j.1574-6968.2008.01149.x | 2008 | Acinetobacter calcoaceticus/*physiology, Amyloid/physiology, Bacterial Adhesion, Biofilms/*growth & development, Comamonas/*physiology, Culture Media, Hydrophobic and Hydrophilic Interactions, In Situ Hybridization, Fluorescence, Microscopy, Confocal, Pseudomonas aeruginosa/*physiology, Waste Disposal, Fluid, *Water Microbiology, *Water Purification | Enzymology |
Phylogeny | 18629434 | Acinetobacter sp. strain Ths, a novel psychrotolerant and alkalitolerant bacterium that utilizes hydrocarbon. | Yamahira K, Hirota K, Nakajima K, Morita N, Nodasaka Y, Yumoto I | Extremophiles | 10.1007/s00792-008-0180-8 | 2008 | Acinetobacter/classification/genetics/*metabolism, DNA Primers, DNA, Bacterial/genetics, Hydrocarbons/*metabolism, Kinetics, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Substrate Specificity | Metabolism |
Phylogeny | 19395563 | Reverse transcription of 16S rRNA to monitor ribosome-synthesizing bacterial populations in the environment. | Lu T, Stroot PG, Oerther DB | Appl Environ Microbiol | 10.1128/AEM.02970-08 | 2009 | Acinetobacter calcoaceticus/genetics/growth & development, Bacteria/*classification/genetics/*growth & development/isolation & purification, DNA Primers/genetics, *Environmental Microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*genetics, *Reverse Transcription, Sequence Analysis, DNA, Sequence Homology | Genetics |
Phylogeny | 19467815 | Acinetobacter strains IH9 and OCI1, two rhizospheric phosphate solubilizing isolates able to promote plant growth, constitute a new genomovar of Acinetobacter calcoaceticus. | Peix A, Lang E, Verbarg S, Sproer C, Rivas R, Santa-Regina I, Mateos PF, Martinez-Molina E, Rodriguez-Barrueco C, Velazquez E | Syst Appl Microbiol | 10.1016/j.syapm.2009.03.004 | 2009 | Acinetobacter calcoaceticus/*classification/*isolation & purification/physiology, Asparagine/metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA, Ribosomal Spacer/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphates/*metabolism, Phylogeny, Plant Roots/*microbiology, Poaceae/*growth & development/*microbiology, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sigma Factor/genetics, *Soil Microbiology, Spain, Tartrates/metabolism | Metabolism |
Phylogeny | 20221727 | Acinetobacter brisouii sp. nov., isolated from a wetland in Korea. | Anandham R, Weon HY, Kim SJ, Kim YS, Kim BY, Kwon SW | J Microbiol | 10.1007/s12275-009-0132-8 | 2010 | Acinetobacter/chemistry/*classification/genetics/*isolation & purification/metabolism, Fatty Acids, Genes, Bacterial, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, *Wetlands | Enzymology |
Metabolism | 20869860 | Influence of microbial interactions and EPS/polysaccharide composition on nutrient removal activity in biofilms formed by strains found in wastewater treatment systems. | Andersson S, Dalhammar G, Kuttuva Rajarao G | Microbiol Res | 10.1016/j.micres.2010.08.005 | 2010 | Bacteria/chemistry/isolation & purification/*metabolism, Bacterial Physiological Phenomena, *Biofilms, Culture Media/metabolism, Denitrification, Extracellular Space/chemistry/*metabolism, *Microbial Interactions, Phosphorus/*metabolism, Polysaccharides, Bacterial/*chemistry/metabolism, Sewage/*microbiology | Enzymology |
Phylogeny | 22934997 | Isolation and molecular identification of landfill bacteria capable of growing on di-(2-ethylhexyl) phthalate and deteriorating PVC materials. | Latorre I, Hwang S, Montalvo-Rodriguez R | J Environ Sci Health A Tox Hazard Subst Environ Eng | 10.1080/10934529.2012.707549 | 2012 | Bacteria/*classification/genetics/*isolation & purification/metabolism, Biodegradation, Environmental, DNA, Bacterial/genetics, Diethylhexyl Phthalate/*metabolism, Endocrine Disruptors/*metabolism, Phylogeny, Polymerase Chain Reaction, Polyvinyl Chloride/*metabolism, RNA, Ribosomal, 16S/genetics, Refuse Disposal, Sequence Analysis, RNA, Water Pollutants, Chemical/*metabolism | Metabolism |
26330857 | Synthesis and Antibacterial Evaluation of New Thione Substituted 1,2,4-Triazole Schiff Bases as Novel Antimicrobial Agents. | Akbari Dilmaghani K, Nasuhi Pur F, Hatami Nezhad M | Iran J Pharm Res | 2015 | ||||
28243273 | Novel Oxadiazole Thioglycosides as Potential Anti-Acinetobacter Agents. | Akbari Dilmaghani K, Nasuhi Pur F, Mahammad Pour M, Mahammad Nejad J | Iran J Pharm Res | 2016 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9083 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30006) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30006 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42150 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11165 | ||||
45829 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 12804) | https://www.ccug.se/strain?id=12804 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68369 | Automatically annotated from API 20NE | |||||
68374 | Automatically annotated from API ID32E | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
77485 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3966.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117098 | Curators of the CIP | Collection of Institut Pasteur (CIP 81.8) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.8 |