Strain identifier
BacDive ID: 8024
Type strain: 
Species: Pilimelia terevasa
Strain history: KCC A-0091 <-- W. D. Kane.
NCBI tax ID(s): 53372 (species)
version 8.1 (current version)
General
@ref: 10710
BacDive-ID: 8024
DSM-Number: 43040
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Pilimelia terevasa DSM 43040 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 53372
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10710 | <- KCC <- W. K. Hanton |
| 67770 | KCC A-0091 <-- W. D. Kane. |
doi: 10.13145/bacdive8024.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Pilimelia
- species: Pilimelia terevasa
- full scientific name: Pilimelia terevasa Kane 1966 (Approved Lists 1980)
@ref: 10710
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Pilimelia
species: Pilimelia terevasa
full scientific name: Pilimelia terevasa Kane 1966
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 97.638
Culture and growth conditions
culture medium
- @ref: 10710
- name: CZAPEK PEPTONE AGAR (DSMZ Medium 83)
- growth: yes
- link: https://mediadive.dsmz.de/medium/83
- composition: Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83; with strain-specific modifications) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l K2HPO4 1.0 g/l KCl 0.5 g/l MgSO4 x 7 H2O 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10710 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10710 | soil | ||||
| 67770 | Soil | IN | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 10710
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | P.terevasa 16S rRNA gene | X93190 | 1478 | ena | 53372 |
| 20218 | Pilimelia terevasa gene for 16S ribosomal RNA, partial sequence | D86946 | 1467 | ena | 53372 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pilimelia terevasa JCM 3091 | GCA_014647915 | contig | ncbi | 53372 |
| 66792 | Pilimelia terevasa strain JCM 3091 | 53372.3 | wgs | patric | 53372 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 86.444 | no |
| anaerobic | no | 98.712 | no |
| halophile | no | 91.985 | no |
| spore-forming | yes | 78.5 | no |
| glucose-util | yes | 84.614 | no |
| thermophile | no | 93.896 | yes |
| motile | no | 55.189 | no |
| aerobic | yes | 89.055 | no |
| flagellated | no | 93.154 | no |
| glucose-ferment | no | 93.463 | no |
External links
@ref: 10710
culture collection no.: DSM 43040, ATCC 25603, KCC A-0091, JCM 3091, BCRC 13660, CBS 570.75, CGMCC 4.5566, HUT 6591, IFO 12701, IFO 14556, IFO 15964, IMET 9270, IMSNU 20107, IMSNU 22035, KCTC 9121, NBRC 12701, NBRC 14556, NBRC 15964, NCIMB 12893, RIA 917
straininfo link
- @ref: 77454
- straininfo: 92826
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10710 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43040) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43040 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77454 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92826.1 | StrainInfo: A central database for resolving microbial strain identifiers |