Pilimelia terevasa (DSM 43040, ATCC 25603, KCC A-0091)

Name: Pilimelia terevasa (DSM 43040, ATCC 25603, KCC A-0091)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8024

Type strain

Culture col. no. DSM 43040 ATCC 25603 KCC A-0091 RIA 917 NCIMB 12893 15 more

NCBI tax ID(s) 53372

Special Collections DSMZ JCM KCTC

Links

Pilimelia terevasa DSM 43040 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92826

ATCC 25603,IFO 14556,DSM 43040,JCM 3091,IFO 12701,IFO 15964,IMET 9270,NCIMB 12893,HUT 6591,CBS 570.75,KCTC 9121,NBRC 12701,NBRC 14556,NBRC 15964,BCRC 13660,CCRC 13660

@ref 20215

Last LPSN update 2025-12-16 09:48:44

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Pilimelia

Species Pilimelia terevasa

Full scientific name Pilimelia terevasa Kane 1966 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10710	CZAPEK PEPTONE AGAR (DSMZ Medium 83)		Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83; with strain-specific modifications) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l K2HPO4 1.0 g/l KCl 0.5 g/l MgSO4 x 7 H2O 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10710	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10710	soil
67770	Soil	IN	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10710	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464791v1 assembly for Pilimelia terevasa JCM 3091	contig	GCA_014647915	53372.3	2989129235	53372	62.91

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	P.terevasa 16S rRNA gene	X93190	1478	53372
20218	Pilimelia terevasa gene for 16S ribosomal RNA, partial sequence	D86946	1467	53372
124043	Pilimelia terevasa strain JCM 3091 16S ribosomal RNA gene, partial sequence.	MT760401	1319	53372

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pilimelia terevasa JCM 3091
NCBI: GCA_014647915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.60	no
125439	motility	BacteriaNetⓘ	no	83.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pilimelia terevasa strain JCM 3091
PATRIC: 53372.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.79	no
125438	anaerobic	anaerobicⓘ	no	92.45	no
125438	spore-forming	spore-formingⓘ	yes	73.82	no
125438	aerobic	aerobicⓘ	yes	85.32	no
125438	thermophilic	thermophileⓘ	no	85.83	no
125438	flagellated	motile2+ⓘ	no	59.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004

References

#10710	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43040
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pilimelia terevasa (DSM 43040, ATCC 25603, KCC A-0091)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647915

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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