Strain identifier

BacDive ID: 7994

Type strain: Yes

Species: Micromonospora peucetia

Strain Designation: B-211

Strain history: DSM 43363 <-- A. Grein B-211.

NCBI tax ID(s): 47871 (species)

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General

@ref: 10983

BacDive-ID: 7994

DSM-Number: 43363

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Micromonospora peucetia B-211 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 47871
  • Matching level: species

strain history

@refhistory
10983<- A. Grein, B-211 (Micromonospora peucetieci)
67770DSM 43363 <-- A. Grein B-211.

doi: 10.13145/bacdive7994.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora peucetia
  • full scientific name: Micromonospora peucetia Kroppenstedt et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Micromonospora peucetica

@ref: 10983

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora peucetia

full scientific name: Micromonospora peucetia Kroppenstedt et al. 2005

strain designation: B-211

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.036
69480100positive

Culture and growth conditions

culture medium

  • @ref: 10983
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10983positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activity
1848717234glucose+
1848722599arabinose-
1848717992sucrose+
1848718222xylose-
1848717268myo-inositol-
1848729864mannitol-
1848728757fructose+
1848726546rhamnose-
1848716634raffinose-
1848762968cellulose+

metabolite production

  • @ref: 67770
  • Chebi-ID: 28748
  • metabolite: doxorubicin
  • production: yes

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18487+++-++--+++---+-+--

Isolation, sampling and environmental information

isolation

@refsample type
10983soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
184871German classification
109831Risk group (German classification)

Sequence information

16S sequences

  • @ref: 10983
  • description: Micromonospora peucetia 16S rRNA gene, type strain DSM 43363
  • accession: X92603
  • length: 1477
  • database: ena
  • NCBI tax ID: 47871

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Micromonospora peucetia strain DSM 4336347871.4wgspatric47871
66792Micromonospora peucetia DSM 433632622736606draftimg47871
67770Micromonospora peucetia DSM 43363GCA_900091625contigncbi47871

GC content

  • @ref: 67770
  • GC-content: 72.28
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.681no
anaerobicno99.341no
halophileno93.851no
spore-formingyes94.809no
glucose-utilyes87.154no
aerobicyes96.658no
motileno95.1no
flagellatedno97.259no
thermophileno98.489yes
glucose-fermentno92.176no

External links

@ref: 10983

culture collection no.: DSM 43363, JCM 12820, NBRC 101886

straininfo link

  • @ref: 77424
  • straininfo: 87949

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15997706Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov.Kroppenstedt RM, Mayilraj S, Wink JM, Kallow W, Schumann P, Secondini C, Stackebrandt ESyst Appl Microbiol10.1016/j.syapm.2004.12.0112005Carbohydrates/analysis, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Isomerism, Micromonospora/*classification/cytology/genetics/physiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Ribotyping, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Vitamin K 2/analysis
Phylogeny21873512Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora.Xi L, Zhang L, Ruan J, Huang YInt J Syst Evol Microbiol10.1099/ijs.0.033787-02011Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, WetlandsGenetics
Phylogeny31601450Micromonospora musae sp. nov., an endophytic actinomycete isolated from roots of Musa species.Kuncharoen N, Kudo T, Yuki M, Okuma M, Booncharoen A, Tanasupawat SSyst Appl Microbiol10.1016/j.syapm.2019.1260202019Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genome, Bacterial/genetics, Micromonospora/chemistry/*classification/genetics/ultrastructure, Musa/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Sugars/analysis, Thailand, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitle
10983Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43363)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43363
18487Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43363.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77424Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87949.1StrainInfo: A central database for resolving microbial strain identifiers