Micromonospora peucetia (DSM 43363, JCM 12820, NBRC 101886)

Name: Micromonospora peucetia (DSM 43363, JCM 12820, NBRC 101886)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7994

Type strain

Strain Designation B-211

Culture col. no. DSM 43363 JCM 12820 NBRC 101886 B-211

NCBI tax ID(s) 47871

Special Collections DSMZ JCM Wink compendium

Links

Micromonospora peucetia B-211 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 87949

DSM 43363,JCM 12820,NBRC 101886

@ref 20215

Last LPSN update 2025-12-16 09:48:43

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora peucetia

Full scientific name Micromonospora peucetia Kroppenstedt et al. 2005

Synonyms (1)

"Micromonospora peucetica"

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.5
125438	90.891	positive
125439	99.6	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10983	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10983	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.802
125439	obligate aerobe	99.1

Spore formation

@ref	Spore formation	Confidence
125438		91.418

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity
18487	22599 ChEBI	arabinose	-
18487	62968 ChEBI	cellulose	+
18487	28757 ChEBI	fructose	+
18487	17234 ChEBI	glucose	+
18487	29864 ChEBI	mannitol	-
18487	17268 ChEBI	myo-inositol	-
18487	16634 ChEBI	raffinose	-
18487	26546 ChEBI	rhamnose	-
18487	17992 ChEBI	sucrose	+
18487	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	28748 ChEBI	doxorubicin

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18487	not determinedn.d.	+	+	+	-	+	+	-	-	+	+	+	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
10983	soil
67770	Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18487	1	German classification According to TRBA 466
10983	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736606 annotated assembly for Micromonospora peucetia DSM 43363	contig	GCA_900091625	47871.4	2622736606	47871	75.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10983	Micromonospora peucetia 16S rRNA gene, type strain DSM 43363	X92603	1477		47871

GC content

@ref	GC-content (mol%)	Method
67770	72.28	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora peucetia DSM 43363
NCBI: GCA_900091625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	79.00	no
125439	motility	BacteriaNetⓘ	no	88.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora peucetia strain DSM 43363
PATRIC: 47871.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.89	no
125438	anaerobic	anaerobicⓘ	no	95.39	no
125438	spore-forming	spore-formingⓘ	yes	91.42	no
125438	aerobic	aerobicⓘ	yes	90.80	no
125438	thermophilic	thermophileⓘ	no	92.85	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Testing the Luedemann hypothesis: the discovery of novel antimicrobials from slow-growing microbes from nutrient-limited environments.	Lin B, Woo S, Philbrick A, Bacsa J, Laskey E, Mehra N, Gondil VS, Mei JA, Jones G, Pavelka MS, Dziejman M, Shutter DA, Melander C, Perritt AM, Jakober R, Shen Y, Chang W-C, Quave CL, Dunman PM, Luedemann G.	mSphere	10.1128/msphere.00367-25	2025
	Rapid and sensitive PCR-dipstick DNA chromatography for multiplex analysis of the oral microbiota.	Tian L, Sato T, Niwa K, Kawase M, Tanner AC, Takahashi N.	Biomed Res Int	10.1155/2014/180323	2014
Phylogeny	Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.	Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Goker M, Goodfellow M.	Sci Rep	10.1038/s41598-017-17392-0	2018
	Taxonomic description of Micromonospora reichwaldensis sp. nov. and its biosynthetic and plant growth-promoting potential.	Nouioui I, Zimmermann A, Gomez Escribano JP, Jando M, Potter G, Neumann-Schaal M, Mast Y.	Microbiol Spectr	10.1128/spectrum.02129-24	2025
Phylogeny	Micromonospora musae sp. nov., an endophytic actinomycete isolated from roots of Musa species.	Kuncharoen N, Kudo T, Yuki M, Okuma M, Booncharoen A, Tanasupawat S	Syst Appl Microbiol	10.1016/j.syapm.2019.126020	2019
Phylogeny	Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora.	Xi L, Zhang L, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.033787-0	2011
Phylogeny	Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov.	Kroppenstedt RM, Mayilraj S, Wink JM, Kallow W, Schumann P, Secondini C, Stackebrandt E	Syst Appl Microbiol	10.1016/j.syapm.2004.12.011	2005

References

#10983	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43363
#18487	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora peucetia (DSM 43363, JCM 12820, NBRC 101886)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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