Strain identifier

BacDive ID: 7877

Type strain: Yes

Species: Dactylosporangium luridum

Strain Designation: BK63

Strain history: <- B.-Y. Kim, Univ. Newcastle; BK63

NCBI tax ID(s): 649008 (species)

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General

@ref: 16292

BacDive-ID: 7877

DSM-Number: 45324

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile

description: Dactylosporangium luridum BK63 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil taken from a hay meadow.

NCBI tax id

  • NCBI tax id: 649008
  • Matching level: species

strain history

  • @ref: 16292
  • history: <- B.-Y. Kim, Univ. Newcastle; BK63

doi: 10.13145/bacdive7877.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Dactylosporangium
  • species: Dactylosporangium luridum
  • full scientific name: Dactylosporangium luridum Kim et al. 2010

@ref: 16292

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Dactylosporangium

species: Dactylosporangium luridum

full scientific name: Dactylosporangium luridum Kim et al. 2010

strain designation: BK63

type strain: yes

Morphology

cell morphology

  • @ref: 29586
  • gram stain: positive
  • motility: yes

pigmentation

  • @ref: 29586
  • production: yes

multimedia

  • @ref: 16292
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45324.jpg
  • caption: Medium 554 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16292N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
16292GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16292STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
16292ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16292positivegrowth28mesophilic
29586positivegrowth20-30
29586positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
29586positivegrowth04-09alkaliphile
29586positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29586
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29586
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2958627082trehalose+carbon source
2958618222xylose+carbon source
2958617632nitrate+reduction

metabolite production

  • @ref: 29586
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 16292
  • sample type: soil taken from a hay meadow
  • geographic location: Northumberland, Cockle Park Experimental Farm
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Meadow
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 16292
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16292Dactylosporangium luridum strain BK63 16S ribosomal RNA gene, partial sequenceFJ9736051441ena649008
16292Dactylosporangium sp. BK63 RpoB (rpoB) gene, partial cdsFJ973611313ena649008

GC content

@refGC-contentmethod
1629270thermal denaturation, midpoint method (Tm)
2958670

External links

@ref: 16292

culture collection no.: DSM 45324, KACC 20933, NRRL B-24775

straininfo link

  • @ref: 77313
  • straininfo: 405694

literature

  • topic: Phylogeny
  • Pubmed-ID: 20688750
  • title: Dactylosporangium luridum sp. nov., Dactylosporangium luteum sp. nov. and Dactylosporangium salmoneum sp. nov., nom. rev., isolated from soil.
  • authors: Kim BY, Stach JEM, Weon HY, Kwon SW, Goodfellow M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.016451-0
  • year: 2010
  • mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16292Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45324)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45324
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29586Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2597828776041
77313Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405694.1StrainInfo: A central database for resolving microbial strain identifiers