Strain identifier

BacDive ID: 7796

Type strain: Yes

Species: Actinocatenispora sera

Strain Designation: KV-744

Culture col. no.: DSM 45336, NBRC 101916, NRRL B-24477

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16298

BacDive-ID: 7796

DSM-Number: 45336

keywords: spore-forming, Bacteria, 16S sequence, genome sequence, mesophilic

description: Actinocatenispora sera KV-744 is a spore-forming, mesophilic bacterium that was isolated from soil.

strain history: <- D. P. Labeda, NRRL; NRRL B-24477 <- S. Omura; KV-744

doi: 10.13145/bacdive7796.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Actinocatenispora
  • species: Actinocatenispora sera
  • full scientific name: Actinocatenispora sera Matsumoto et al. 2007

@ref: 16298

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Actinocatenispora

species: Actinocatenispora sera

full scientific name: Actinocatenispora sera Matsumoto et al. 2007

strain designation: KV-744

type strain: yes

Morphology

cell morphology

  • @ref: 32292
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlink
16298TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
16298GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf

culture temp

@refgrowthtypetemperaturerange
16298positivegrowth28mesophilic
32292positivegrowth13-37
32292positiveoptimum21.5psychrophilic

culture pH

@refabilitytypepH
32292positivegrowth06-09
32292positiveoptimum7.5

Physiology and metabolism

spore formation

  • @ref: 32292
  • spore formation: yes

observation

  • @ref: 32292
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3229215963ribitol+carbon source
3229226546rhamnose+carbon source
3229217151xylitol+carbon source
3229218222xylose+carbon source
3229217632nitrate+reduction

Isolation, sampling and environmental information

isolation

  • @ref: 16298
  • sample type: soil
  • geographic location: Niigato
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 16298
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16298
  • description: Actinocatenispora sera gene for 16S rRNA, partial sequence, strain: KV-744
  • accession: AB263096
  • length: 1481
  • database: ena
  • NCBI tax ID: 390989

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinocatenispora sera NRRL B-24477GCA_000720965contigncbi390989
66792Actinocatenispora sera strain NRRL B-24477390989.3wgspatric390989

GC content

  • @ref: 16298
  • GC-content: 72

External links

@ref: 16298

culture collection no.: DSM 45336, NBRC 101916, NRRL B-24477

straininfo link

@refpassport
20218http://www.straininfo.net/strains/756729
20218http://www.straininfo.net/strains/756730

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16298Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45336)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45336
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2853210.1099/ijs.0.65270-0
32292Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28532
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)