Strain identifier
BacDive ID: 7796
Type strain: 
Species: Actinocatenispora sera
Strain Designation: KV-744
Strain history: NRRL B-24477 <-- S. ?mura KV-744.
NCBI tax ID(s): 390989 (species)
version 8.1 (current version)
General
@ref: 16298
BacDive-ID: 7796
DSM-Number: 45336
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Actinocatenispora sera KV-744 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 390989
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16298 | <- D. P. Labeda, NRRL; NRRL B-24477 <- S. Omura; KV-744 |
| 67770 | NRRL B-24477 <-- S. ?mura KV-744. |
doi: 10.13145/bacdive7796.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinocatenispora
- species: Actinocatenispora sera
- full scientific name: Actinocatenispora sera Matsumoto et al. 2007
@ref: 16298
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinocatenispora
species: Actinocatenispora sera
full scientific name: Actinocatenispora sera Matsumoto et al. 2007
strain designation: KV-744
type strain: yes
Morphology
cell morphology
| @ref | motility | gram stain | confidence |
|---|---|---|---|
| 32292 | no | ||
| 69480 | positive | 100 |
multimedia
- @ref: 16298
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45336.jpg
- caption: Medium 553 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16298 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 16298 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16298 | positive | growth | 28 | mesophilic |
| 32292 | positive | growth | 13-37 | |
| 32292 | positive | optimum | 21.5 | psychrophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32292 | positive | growth | 06-09 | alkaliphile |
| 32292 | positive | optimum | 7.5 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 32292 | yes | |
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
| @ref | observation |
|---|---|
| 32292 | aggregates in chains |
| 67770 | quinones: MK-9(H4) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32292 | 15963 | ribitol | + | carbon source |
| 32292 | 26546 | rhamnose | + | carbon source |
| 32292 | 17151 | xylitol | + | carbon source |
| 32292 | 18222 | xylose | + | carbon source |
| 32292 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16298 | soil | Niigato | Japan | JPN | Asia |
| 67770 | Soil | Niigata Pref. | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5573.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2691;97_3305;98_4159;99_5573&stattab=map
- Last taxonomy: Actinocatenispora
- 16S sequence: AB263096
- Sequence Identity:
- Total samples: 5356
- soil counts: 2874
- aquatic counts: 438
- animal counts: 1016
- plant counts: 1028
Safety information
risk assessment
- @ref: 16298
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16298
- description: Actinocatenispora sera gene for 16S rRNA, partial sequence, strain: KV-744
- accession: AB263096
- length: 1481
- database: ena
- NCBI tax ID: 390989
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinocatenispora sera NBRC 101916 | GCA_018324685 | complete | ncbi | 390989 |
| 66792 | Actinocatenispora sera strain NBRC 101916 | 390989.4 | complete | patric | 390989 |
| 67770 | Actinocatenispora sera NRRL B-24477 | GCA_000720965 | contig | ncbi | 390989 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16298 | 72 | |
| 67770 | 72 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 98.949 | no |
| gram-positive | yes | 91.324 | no |
| anaerobic | no | 98.823 | no |
| aerobic | yes | 91.873 | no |
| halophile | no | 82.741 | no |
| spore-forming | yes | 88.566 | yes |
| thermophile | no | 97.564 | yes |
| glucose-util | yes | 90.276 | no |
| motile | no | 93.438 | yes |
| glucose-ferment | no | 88.509 | no |
External links
@ref: 16298
culture collection no.: DSM 45336, NBRC 101916, NRRL B-24477, JCM 15920
straininfo link
- @ref: 77238
- straininfo: 402372
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17978234 | Actinocatenispora sera sp. nov., isolated by long-term culturing. | Matsumoto A, Takahashi Y, Fukumoto M, Omura S | Int J Syst Evol Microbiol | 10.1099/ijs.0.65270-0 | 2007 | Bacterial Typing Techniques, Base Composition, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Time Factors | Cultivation |
| Phylogeny | 19643893 | Actinocatenispora rupis sp. nov., isolated from cliff soil, and emended description of the genus Actinocatenispora. | Seo SH, Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.012922-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology | Genetics |
| Phylogeny | 34242158 | Actinocatenispora comari sp. nov., an endophytic actinomycete isolated from aerial parts of Comarum salesowianum. | Oyunbileg N, Iizaka Y, Hamada M, Davaapurev BO, Fukumoto A, Tsetseg B, Kato F, Tamura T, Batkhuu J, Anzai Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004861 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, Micromonosporaceae/*classification/isolation & purification, Mongolia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Components, Aerial/*microbiology, RNA, Ribosomal, 16S/genetics, Rosacea/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16298 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45336) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45336 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32292 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28532 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77238 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402372.1 | StrainInfo: A central database for resolving microbial strain identifiers |