Strain identifier
BacDive ID: 7796
Type strain:
Species: Actinocatenispora sera
Strain Designation: KV-744
Culture col. no.: DSM 45336, NBRC 101916, NRRL B-24477
General
@ref: 16298
BacDive-ID: 7796
DSM-Number: 45336
keywords: spore-forming, Bacteria, 16S sequence, genome sequence, mesophilic
description: Actinocatenispora sera KV-744 is a spore-forming, mesophilic bacterium that was isolated from soil.
strain history: <- D. P. Labeda, NRRL; NRRL B-24477 <- S. Omura; KV-744
doi: 10.13145/bacdive7796.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinocatenispora
- species: Actinocatenispora sera
- full scientific name: Actinocatenispora sera Matsumoto et al. 2007
@ref: 16298
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinocatenispora
species: Actinocatenispora sera
full scientific name: Actinocatenispora sera Matsumoto et al. 2007
strain designation: KV-744
type strain: yes
Morphology
cell morphology
- @ref: 32292
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link |
---|---|---|---|
16298 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
16298 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16298 | positive | growth | 28 | mesophilic |
32292 | positive | growth | 13-37 | |
32292 | positive | optimum | 21.5 | psychrophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
32292 | positive | growth | 06-09 |
32292 | positive | optimum | 7.5 |
Physiology and metabolism
spore formation
- @ref: 32292
- spore formation: yes
observation
- @ref: 32292
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32292 | 15963 | ribitol | + | carbon source |
32292 | 26546 | rhamnose | + | carbon source |
32292 | 17151 | xylitol | + | carbon source |
32292 | 18222 | xylose | + | carbon source |
32292 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
- @ref: 16298
- sample type: soil
- geographic location: Niigato
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 16298
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16298
- description: Actinocatenispora sera gene for 16S rRNA, partial sequence, strain: KV-744
- accession: AB263096
- length: 1481
- database: ena
- NCBI tax ID: 390989
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinocatenispora sera NRRL B-24477 | GCA_000720965 | contig | ncbi | 390989 |
66792 | Actinocatenispora sera strain NRRL B-24477 | 390989.3 | wgs | patric | 390989 |
GC content
- @ref: 16298
- GC-content: 72
External links
@ref: 16298
culture collection no.: DSM 45336, NBRC 101916, NRRL B-24477
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/756729 |
20218 | http://www.straininfo.net/strains/756730 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
16298 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45336) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45336 | ||||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
28532 | 10.1099/ijs.0.65270-0 | ||||||
32292 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28532 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |