Name: Actinocatenispora sera KV-744
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7796

Type strain:

Species: Actinocatenispora sera

Strain Designation: KV-744

Culture col. no.: DSM 45336, NBRC 101916, NRRL B-24477, JCM 15920

Strain history: NRRL B-24477 <-- S. ?mura KV-744.

NCBI tax ID(s): 390989 (species)

SI-ID 402372

DSM 45336

Special Collections

Section

Actinocatenispora sera KV-744 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinocatenispora*
	Species	**Actinocatenispora sera**
	Full Scientific Name (LPSN)	Actinocatenispora sera Matsumoto et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.638

[Ref.: #32292]	Motility	no

Multimedia content

[Ref.: #16298]

Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16298]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16298]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16298]

Culture medium composition

expand / minimize

[Ref.: #16298]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

[Ref.: #16298]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16298]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16298]	growth	28 °C
[Ref.: #32292]	growth	13-37 °C
[Ref.: #32292]	optimum	21.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32292]			optimum	7.5
[Ref.: #32292]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32292]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #32292]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32292]	nitrate ChEBI	+	reduction
[Ref.: #32292]	rhamnose ChEBI	+	carbon source
[Ref.: #32292]	ribitol ChEBI	+	carbon source
[Ref.: #32292]	xylitol ChEBI	+	carbon source
[Ref.: #32292]	xylose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16298]	Sample type/isolated from	soil
[Ref.: #16298]	Geographic location (country and/or sea, region)	Niigato
[Ref.: #16298]	Country	Japan
[Ref.: #16298]	Country ISO 3 Code	JPN
[Ref.: #16298]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Niigata Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB263096 (>99% sequence identity) for Actinocatenispora from Microbeatlas

Aquatic Samples	438
Soil Samples	2874
Animal Samples	1016
Plant Samples	1028
Total Samples	5356

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16298]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16298]	Actinocatenispora sera gene for 16S rRNA, partial sequence, strain: KV-744	AB263096	1481	GenBank ENA	390989 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinocatenispora sera NRRL B-24477	GCA_000720965	contig	GenBank ENA	390989 tax ID
[Ref.: #66792]	Actinocatenispora sera NBRC 101916	GCA_018324685	complete	GenBank ENA	390989 tax ID	*
[Ref.: #66792]	Actinocatenispora sera strain NBRC 101916	390989.4	complete	PATRIC	390989 tax ID	*

[Ref.: #16298]	GC-content	72 mol%
[Ref.: #67770]	GC-content	72 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinocatenispora sera NBRC 101916 NCBI: GCA_018324685.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinocatenispora sera NBRC 101916 NCBI: GCA_018324685.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.638	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.396	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.934	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.296	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.422	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	yes

Availability in culture collections External links

[Ref.: #16298]

Culture collection no.

DSM 45336, NBRC 101916, NRRL B-24477, JCM 15920

[Ref.: #77238]

SI-ID 402372

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocatenispora comari sp. nov., an endophytic actinomycete isolated from aerial parts of Comarum salesowianum.	Oyunbileg N, Iizaka Y, Hamada M, Davaapurev BO, Fukumoto A, Tsetseg B, Kato F, Tamura T, Batkhuu J, Anzai Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004861	2021	*
Phylogeny	Actinocatenispora rupis sp. nov., isolated from cliff soil, and emended description of the genus Actinocatenispora.	Seo SH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.012922-0	2009	*
Phylogeny	Actinocatenispora sera sp. nov., isolated by long-term culturing.	Matsumoto A, Takahashi Y, Fukumoto M, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.65270-0	2007	*

References

#16298

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45336

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32292

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28532 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77238

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402372.1 )

#28532

IJSEM 2651 2007 ( DOI 10.1099/ijs.0.65270-0 , PubMed 17978234 )

* These data were automatically processed and therefore are not curated

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Actinocatenispora sera NBRC 101916

Actinocatenispora sera NBRC 101916

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