Strain identifier

BacDive ID: 7633

Type strain: Yes

Species: Citricoccus parietis

Strain Designation: 02-Je-010

Strain history: CCM 7609 <-- P. Kämpfer 02-Je-010.

NCBI tax ID(s): 592307 (species)

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General

@ref: 16111

BacDive-ID: 7633

DSM-Number: 22055

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Citricoccus parietis 02-Je-010 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from mould-colonized wall.

NCBI tax id

  • NCBI tax id: 592307
  • Matching level: species

strain history

@refhistory
16111<- P. Kämpfer, Univ. Giessen, Germany; 02-Je-010
67770CCM 7609 <-- P. Kämpfer 02-Je-010.

doi: 10.13145/bacdive7633.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Citricoccus
  • species: Citricoccus parietis
  • full scientific name: Citricoccus parietis Schäfer et al. 2010

@ref: 16111

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Citricoccus

species: Citricoccus parietis

full scientific name: Citricoccus parietis Schäfer et al. 2010

strain designation: 02-Je-010

type strain: yes

Morphology

cell morphology

  • @ref: 29409
  • gram stain: positive
  • cell width: 1.3 µm
  • cell shape: coccus-shaped

pigmentation

  • @ref: 29409
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16111
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16111positivegrowth28mesophilic
29409positivegrowth04-36
61307positivegrowth30-37mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
29409positivegrowth6.5-12alkaliphile
29409positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29409aerobe
61307aerobe

halophily

  • @ref: 29409
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 01-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29409178794-hydroxybenzoate+carbon source
2940930089acetate+carbon source
2940917128adipate+carbon source
2940927570histidine+carbon source
2940924996lactate+carbon source
2940928044phenylalanine+carbon source
2940917272propionate+carbon source
2940917148putrescine+carbon source
2940917822serine+carbon source
294099300suberic acid+carbon source

enzymes

@refvalueactivityec
29409catalase+1.11.1.6
29409cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16111mould-colonized wallJenaGermanyDEUEurope
61307Wall of an indoor environmentJenaGermanyDEUEurope
67770Wall of a house colonized with mouldJenaGermanyDEUEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Fungi

taxonmaps

  • @ref: 69479
  • File name: preview.99_24435.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_453;97_3040;98_6467;99_24435&stattab=map
  • Last taxonomy: Micrococcus
  • 16S sequence: FM992367
  • Sequence Identity:
  • Total samples: 478
  • soil counts: 111
  • aquatic counts: 38
  • animal counts: 314
  • plant counts: 15

Safety information

risk assessment

  • @ref: 16111
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16111
  • description: Citricoccus parietis partial 16S rRNA gene, type strain 02-Je-010T
  • accession: FM992367
  • length: 1415
  • database: ena
  • NCBI tax ID: 592307

GC content

  • @ref: 29409
  • GC-content: 68

External links

@ref: 16111

culture collection no.: DSM 22055, CCM 7609, CCUG 57388, JCM 18704

straininfo link

  • @ref: 77077
  • straininfo: 403709

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19651738Citricoccus parietis sp. nov., isolated from a mould-colonized wall and emended description of Citricoccus alkalitolerans Li et al. 2005.Schafer J, Martin K, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.012567-02009Base Sequence, DNA, Bacterial/genetics, *Environmental Microbiology, Genes, Bacterial/genetics, Micrococcaceae/*classification/genetics/physiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species SpecificityGenetics
Phylogeny27502023Citricoccus lacusdiani sp. nov., an actinobacterium promoting Microcystis growth with limited soluble phosphorus.Zhang BH, Salam N, Cheng J, Xiao M, Li HQ, Yang JY, Zha DM, Li WJAntonie Van Leeuwenhoek10.1007/s10482-016-0745-y2016Base Composition, DNA, Bacterial, Micrococcaceae/classification/*isolation & purification/metabolism, *Microcystis/metabolism, Molecular Typing, Phosphorus/*metabolism, RNA, Bacterial, RNA, Ribosomal, 16SMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16111Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22055)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22055
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29409Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2581628776041
61307Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57388)https://www.ccug.se/strain?id=57388
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77077Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403709.1StrainInfo: A central database for resolving microbial strain identifiers