Citricoccus parietis (DSM 22055, CCM 7609, CCUG 57388)

Name: Citricoccus parietis (DSM 22055, CCM 7609, CCUG 57388)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7633

Type strain

Strain Designation 02-Je-010

Culture col. no. DSM 22055 CCM 7609 CCUG 57388 02-Je-010 JCM 18704

NCBI tax ID(s) 592307

Special Collections DSMZ CCUG JCM Literature strains

Links

Citricoccus parietis 02-Je-010 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from mould-colonized wall.

Gram-positive coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403709

JCM 18704,DSM 22055,CCUG 57388

@ref 20215

Last LPSN update 2025-12-16 09:48:38

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Citricoccus

Species Citricoccus parietis

Full scientific name Citricoccus parietis Schäfer et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape
29409	positive	1.3 µm	coccus-shaped

Pigmentation

29409

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16111	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16111	positive	growth	28	mesophilic
29409	positive	growth	04-36
61307	positive	growth	30-37	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29409	positive	optimum	8.5
29409	positive	growth	6.5-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29409	aerobe
61307	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29409	NaCl	positive	growth	01-10 %

Observation

67770

Observationquinones: MK-9(H₂), MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29409	17879 ChEBI	4-hydroxybenzoate	+	carbon source
29409	30089 ChEBI	acetate	+	carbon source
29409	17128 ChEBI	adipate	+	carbon source
29409	27570 ChEBI	histidine	+	carbon source
29409	24996 ChEBI	lactate	+	carbon source
29409	28044 ChEBI	phenylalanine	+	carbon source
29409	17272 ChEBI	propionate	+	carbon source
29409	17148 ChEBI	putrescine	+	carbon source
29409	17822 ChEBI	serine	+	carbon source
29409	9300 ChEBI	suberic acid	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29409	catalase	+	1.11.1.6
29409	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fungi

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16111	mould-colonized wall	Jena	Germany	DEU	Europe
61307	Wall of an indoor environment	Jena	Germany	DEU	Europe
67770	Wall of a house colonized with mould	Jena	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence FM992367 (>99% sequence identity) for Micrococcus from Microbeatlas

Aquatic Samples	38
Soil Samples	111
Animal Samples	314
Plant Samples	15
Total Samples	478

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16111	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4243304v1 assembly for Citricoccus parietis CCM 7609	contig	GCA_042433045	592307	65.64
124043	ASM4242766v1 assembly for Citricoccus parietis CCM 7609	contig	GCA_042427665	592307	37.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16111	Citricoccus parietis partial 16S rRNA gene, type strain 02-Je-010T	FM992367	1415		592307
124043	Citricoccus parietis strain CCM 7609 16S ribosomal RNA gene, partial sequence.	MT760156	1340		592307

GC content

29409

GC-content (mol%)68

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Citricoccus lacusdiani sp. nov., an actinobacterium promoting Microcystis growth with limited soluble phosphorus.	Zhang BH, Salam N, Cheng J, Xiao M, Li HQ, Yang JY, Zha DM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0745-y	2016
Phylogeny	Citricoccus parietis sp. nov., isolated from a mould-colonized wall and emended description of Citricoccus alkalitolerans Li et al. 2005.	Schafer J, Martin K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.012567-0	2009

References

#16111	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22055
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25816	IJSEM 271 2010 ( DOI 10.1099/ijs.0.012567-0 , PubMed 19651738 )
#29409	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25816
#61307	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57388
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Citricoccus parietis (DSM 22055, CCM 7609, CCUG 57388)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042433045

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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