Strain identifier
BacDive ID: 7516
Type strain: 
Species: Alpinimonas psychrophila
Strain Designation: Cr8-25
Strain history: LMG 26215 <-- R. Margesin Cr8-25.
NCBI tax ID(s): 748908 (species)
version 8.1 (current version)
General
@ref: 17305
BacDive-ID: 7516
DSM-Number: 23737
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, psychrophilic, Gram-variable, rod-shaped
description: Alpinimonas psychrophila Cr8-25 is a microaerophile, psychrophilic, Gram-variable bacterium that was isolated from glacier cryoconite.
NCBI tax id
- NCBI tax id: 748908
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17305 | <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr8-25 |
| 67770 | LMG 26215 <-- R. Margesin Cr8-25. |
doi: 10.13145/bacdive7516.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Alpinimonas
- species: Alpinimonas psychrophila
- full scientific name: Alpinimonas psychrophila Schumann et al. 2012
@ref: 17305
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Alpinimonas
species: Alpinimonas psychrophila
full scientific name: Alpinimonas psychrophila Schumann et al. 2012
strain designation: Cr8-25
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30442 | variable | 1.15 µm | 0.35 µm | rod-shaped | no | |
| 69480 | positive | 100 |
pigmentation
- @ref: 30442
- production: yes
Culture and growth conditions
culture medium
- @ref: 17305
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17305 | positive | growth | 15 | psychrophilic |
| 30442 | positive | growth | 1-20 | psychrophilic |
| 67770 | positive | growth | 15 | psychrophilic |
culture pH
- @ref: 30442
- ability: positive
- type: growth
- pH: 7
Physiology and metabolism
oxygen tolerance
- @ref: 30442
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
halophily
- @ref: 30442
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 67770
- observation: quinones: MK-11, MK-10
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30442 | 17234 | glucose | + | carbon source |
| 30442 | 37684 | mannose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30442 | acid phosphatase | + | 3.1.3.2 |
| 30442 | alkaline phosphatase | + | 3.1.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17305 | glacier cryoconite | Ötztaler Alps | Austria | AUT | Europe |
| 67770 | Alpine glacier cryoconite from the Rettenbach glacier in the Oetztal Alps | Tyrol | Austria | AUT | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Glacier |
| #Environmental | #Terrestrial | #Geologic |
| #Condition | #Psychrophilic (<10°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_96723.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_9250;97_11123;98_66300;99_96723&stattab=map
- Last taxonomy: Aurantimicrobium
- 16S sequence: GU784868
- Sequence Identity:
- Total samples: 824
- soil counts: 10
- aquatic counts: 699
- animal counts: 107
- plant counts: 8
Safety information
risk assessment
- @ref: 17305
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17305
- description: Alpinimonas psychrophila strain Cr8-25 16S ribosomal RNA gene, partial sequence
- accession: GU784868
- length: 1513
- database: ena
- NCBI tax ID: 748908
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alpinimonas psychrophila DSM 23737 | GCA_014137865 | contig | ncbi | 748908 |
| 66792 | Alpinimonas psychrophila strain DSM 23737 | 748908.3 | wgs | patric | 748908 |
| 66792 | Alpinimonas psychrophila DSM 23737 | 2820962504 | draft | img | 748908 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 17305 | 58.8 | high performance liquid chromatography (HPLC) |
| 30442 | 58.8 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 92.484 | yes |
| flagellated | no | 97.968 | yes |
| gram-positive | yes | 84.531 | yes |
| anaerobic | no | 98.656 | no |
| halophile | no | 92.869 | yes |
| spore-forming | no | 93.953 | no |
| thermophile | no | 98.322 | yes |
| glucose-util | yes | 82.45 | no |
| aerobic | yes | 90.831 | no |
| glucose-ferment | no | 91.147 | no |
External links
@ref: 17305
culture collection no.: DSM 23737, LMG 26215, JCM 18951
straininfo link
- @ref: 76961
- straininfo: 375218
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22228665 | Alpinimonas psychrophila gen. nov., sp. nov., an actinobacterium of the family Microbacteriaceae isolated from alpine glacier cryoconite. | Schumann P, Zhang DC, Redzic M, Margesin R | Int J Syst Evol Microbiol | 10.1099/ijs.0.036160-0 | 2012 | Actinomycetales/*classification/genetics/isolation & purification, Austria, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/analysis, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis | Genetics |
| Phylogeny | 24158943 | Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water. | Li AH, Liu HC, Xin YH, Kim SG, Zhou YG | Int J Syst Evol Microbiol | 10.1099/ijs.0.052670-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Ubiquinone/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 26294911 | Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water. | Nakai R, Baba T, Niki H, Nishijima M, Naganuma T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000541 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Japan, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17305 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23737) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23737 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30442 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26778 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 76961 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID375218.1 | StrainInfo: A central database for resolving microbial strain identifiers |