Name: Alpinimonas psychrophila Cr8-25
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7516

Type strain:

Species: Alpinimonas psychrophila

Strain Designation: Cr8-25

Culture col. no.: DSM 23737, LMG 26215, JCM 18951

Strain history: LMG 26215 <-- R. Margesin Cr8-25.

NCBI tax ID(s): 748908 (species)

SI-ID 375218

LMG 26215, DSM 23737, JCM 18951

Section

Alpinimonas psychrophila Cr8-25 is a microaerophile, psychrophilic, Gram-variable bacterium that was isolated from glacier cryoconite.

Gram-variable
rod-shaped
microaerophile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Alpinimonas*
	Species	**Alpinimonas psychrophila**
	Full Scientific Name (LPSN)	Alpinimonas psychrophila Schumann et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30442]	Gram stain	variable
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30442]	Cell length	1.15 µm

[Ref.: #30442]	Cell width	0.35 µm

[Ref.: #30442]	Cell shape	rod-shaped

[Ref.: #30442]	Motility	no

[Ref.: #30442]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17305]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17305]

Culture medium growth

[Ref.: #17305]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17305]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17305]	growth	15 °C
[Ref.: #30442]	growth	1-20 °C
[Ref.: #67770]	growth	15 °C

[Ref.: #17305]	Temperature range	psychrophilic
[Ref.: #30442]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30442]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30442]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30442]		NaCl		growth	0-1	%

[Ref.: #67770]

Observation

quinones: MK-11, MK-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30442]		glucose ChEBI	+	carbon source
[Ref.: #30442]		mannose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30442]		acid phosphatase	+	3.1.3.2
[Ref.: #30442]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17305]	Sample type/isolated from	glacier cryoconite
[Ref.: #17305]	Geographic location (country and/or sea, region)	Ötztaler Alps
[Ref.: #17305]	Country	Austria
[Ref.: #17305]	Country ISO 3 Code	AUT
[Ref.: #17305]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Alpine glacier cryoconite from the Rettenbach glacier in the Oetztal Alps
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tyrol
[Ref.: #67770]	Country	Austria
[Ref.: #67770]	Country ISO 3 Code	AUT
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Geologic
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU784868 (>99% sequence identity) for Aurantimicrobium from Microbeatlas

Aquatic Samples	699
Soil Samples	10
Animal Samples	107
Plant Samples	8
Total Samples	824

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17305]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17305]	Alpinimonas psychrophila strain Cr8-25 16S ribosomal RNA gene, partial sequence	GU784868	1513	ENA	748908 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alpinimonas psychrophila DSM 23737	GCA_014137865	contig	GenBank	748908 tax ID	*
[Ref.: #66792]	Alpinimonas psychrophila strain DSM 23737	748908.3	wgs	PATRIC	748908 tax ID	*
[Ref.: #66792]	Alpinimonas psychrophila DSM 23737	2820962504	draft	JGI IMG/M	748908 tax ID	*

[Ref.: #17305]	GC-content	58.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30442]	GC-content	58.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alpinimonas psychrophila strain DSM 23737 PATRIC: 748908.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alpinimonas psychrophila strain DSM 23737 PATRIC: 748908.3
[Ref.: #69480]	motile	no	92.484	yes
[Ref.: #69480]	flagellated	no	97.968	yes
[Ref.: #69480]	gram-positive	yes	84.531	yes
[Ref.: #69480]	anaerobic	no	98.656	no
[Ref.: #69480]	halophile	no	92.869	yes
[Ref.: #69480]	spore-forming	no	93.953	no
[Ref.: #69480]	thermophile	no	98.322	yes
[Ref.: #69480]	glucose-util	yes	82.45	no
[Ref.: #69480]	aerobic	yes	90.831	no
[Ref.: #69480]	glucose-ferment	no	91.147	no

Availability in culture collections External links

[Ref.: #17305]

Culture collection no.

DSM 23737, LMG 26215, JCM 18951

[Ref.: #76961]

SI-ID 375218

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water.	Nakai R, Baba T, Niki H, Nishijima M, Naganuma T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000541	2015	*
Phylogeny	Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.	Li AH, Liu HC, Xin YH, Kim SG, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.052670-0	2013	*
Phylogeny	Alpinimonas psychrophila gen. nov., sp. nov., an actinobacterium of the family Microbacteriaceae isolated from alpine glacier cryoconite.	Schumann P, Zhang DC, Redzic M, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.036160-0	2012	*

References

#17305

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23737

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30442

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26778 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76961

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID375218.1 )

#26778

IJSEM 2724 2012 ( DOI 10.1099/ijs.0.036160-0 , PubMed 22228665 )

* These data were automatically processed and therefore are not curated

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Alpinimonas psychrophila strain DSM 23737

Alpinimonas psychrophila strain DSM 23737

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