version 5.0 (current version)
General
@ref: 6201
BacDive-ID: 7381
DSM-Number: 15944
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Microbacterium gubbeenense DSM 15944 is a mesophilic bacterium that was isolated from surface of a smear-ripened cheese.
strain history: <- D. Janssens, LMG <- T. M. Cogan; DPC 5286 <- N. M. Brennan
doi: 10.13145/bacdive7381.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium gubbeenense
- full scientific name: Microbacterium gubbeenense Brennan et al. 2001
@ref: 6201
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium gubbeenense
full scientific name: Microbacterium gubbeenense Brennan et al. 2001 emend. Nouioui et al. 2018
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6201 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf | |
| 6201 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
| 33091 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6201 | positive | growth | 28 | mesophilic |
| 33091 | positive | growth | 30 | mesophilic |
Physiology and metabolism
murein
- @ref: 6201
- murein short key: B01
- type: B1alpha {Gly} [L-Lys] D-Glu(Hyg)-Gly-L-Lys
Isolation, sampling and environmental information
isolation
- @ref: 6201
- sample type: surface of a smear-ripened cheese
- geographic location: Cork
- country: Ireland
- origin.country: IRL
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
Safety information
risk assessment
- @ref: 6201
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6201
- description: Microbacterium gubbeenense strain LMG S-19263 16S ribosomal RNA gene, partial sequence
- accession: AF263563
- length: 1317
- database: ena
- NCBI tax ID: 159896
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Microbacterium gubbeenense DSM 15944 | GCA_000422745 | scaffold | ncbi | 1122237 |
| 66792 | Microbacterium gubbeenense DSM 15944 | 1122237.3 | wgs | patric | 1122237 |
| 66792 | Microbacterium gubbeenense DSM 15944 | 2524614763 | permanent | img | 1122237 |
GC content
- @ref: 6201
- GC-content: 69-75
External links
@ref: 6201
culture collection no.: DSM 15944, LMG 19263, NCIMB 30129, DPC 5286
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/381450 |
| 20218 | http://www.straininfo.net/strains/276719 |
| 20218 | http://www.straininfo.net/strains/279166 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6201 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15944) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15944 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 33091 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4591 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |