Strain identifier

BacDive ID: 7381

Type strain: Yes

Species: Microbacterium gubbeenense

Culture col. no.: DSM 15944, LMG 19263, NCIMB 30129, DPC 5286

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 6201

BacDive-ID: 7381

DSM-Number: 15944

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Microbacterium gubbeenense DSM 15944 is a mesophilic bacterium that was isolated from surface of a smear-ripened cheese.

strain history: <- D. Janssens, LMG <- T. M. Cogan; DPC 5286 <- N. M. Brennan

doi: 10.13145/bacdive7381.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium gubbeenense
  • full scientific name: Microbacterium gubbeenense Brennan et al. 2001

@ref: 6201

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium gubbeenense

full scientific name: Microbacterium gubbeenense Brennan et al. 2001 emend. Nouioui et al. 2018

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6201R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
6201TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
33091MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6201positivegrowth28mesophilic
33091positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 6201
  • murein short key: B01
  • type: B1alpha {Gly} [L-Lys] D-Glu(Hyg)-Gly-L-Lys

Isolation, sampling and environmental information

isolation

  • @ref: 6201
  • sample type: surface of a smear-ripened cheese
  • geographic location: Cork
  • country: Ireland
  • origin.country: IRL
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

Safety information

risk assessment

  • @ref: 6201
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6201
  • description: Microbacterium gubbeenense strain LMG S-19263 16S ribosomal RNA gene, partial sequence
  • accession: AF263563
  • length: 1317
  • database: ena
  • NCBI tax ID: 159896

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium gubbeenense DSM 15944GCA_000422745scaffoldncbi1122237
66792Microbacterium gubbeenense DSM 159441122237.3wgspatric1122237
66792Microbacterium gubbeenense DSM 159442524614763permanentimg1122237

GC content

  • @ref: 6201
  • GC-content: 69-75

External links

@ref: 6201

culture collection no.: DSM 15944, LMG 19263, NCIMB 30129, DPC 5286

straininfo link

@refpassport
20218http://www.straininfo.net/strains/381450
20218http://www.straininfo.net/strains/276719
20218http://www.straininfo.net/strains/279166

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6201Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15944)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15944
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33091Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4591
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)